Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 159897208

GI number: 159897208

Start: 778164

End: 779027

Strand: Reverse

Name: xerD [C]

Synonym: Haur_0679

Alternate gene names: 159897208

Gene position: 779027-778164 (Counterclockwise)

Preceding gene: 159897212

Following gene: 159897207

Centisome position: 12.27

GC content: 52.43

Gene sequence:

>864_bases
ATGATTACGCAATGGATCGAAGAATATTTGTCCGCCAAAATCGCCGAACGCCGCAGCCCTGCTACCATCACTACCTACCG
CATCCGGTTAGGACGGTTTGGTACTTGGGTGCTCGAGCAACCGAATCAGGTGCTCACTCGTGCGTTATTGCGGGCCTACA
GTGCGTATTTAGCCCAACAAAACATCAGCATTACCAGTCACTATAGTTATCTCAACGATGCCCTGGTCCTCGTGCGCTGG
CTTGCTGAAGAAGGCTATATTCAACCCGTTAAGACCGATAAACTCAAACCCCGATTACCAAAGCGCTTACCTGCCCACTA
CACGATGGATCAAATTAAGCGCCTCCTGCTGGTTGCCGAGCTTCGTGAAAAAGCCATGCTCTGTGTCTTACTGGATACCG
GCGTTCGGGTCAGTGAACTGATTCAACTCCGCCGGACCAGCTTTGACTCGGAAGGCTGCGCCATGATTCTTGGCAAAGGC
AGCAAGGATCGGTATATCTGGATTTCATCCGTGACCCAAGAAGTCCTTCGAACCTACATCGCCAGTCGGACGGATACGAA
CCCTGCGCTGTTTGTCAGCCATCGCCAGCAAAAAACCCTGACGATTAGCGGCGTACACCAGAGCTTCGATCGCGTAGCTT
CCGACGCGGAGATCCGCAATGATGTGCGGCGTTTGATCCACTCCTTTCGTGCCACCTTCGCCCGCGAACTGATCAAGAAA
GGCCTTGATGCAGAAAGTCTGCGGGTGTTGATGGGCCATGAAACGATTCAAATGTCTCTGCACTATGCACAACTCTCATC
CCATGAGGCGACCCAAAATCGGCAAGGCGTGAACCTCCTCGAGAAGGTGGAGTCATGCTTATAA

Upstream 100 bases:

>100_bases
CCATCACATACTCTTTCCGCTCCGCGCGGCCTCGAGTCGAGTATCTGCGAACGCACACGCTATCCCATTGGGATACCGCG
ATAGATCGAGGTCATGATTA

Downstream 100 bases:

>100_bases
GCCTCCAGTATGCCCACCTATCCCGGTAGAAACAAGGGAAAAAGTGTACAGAAAGTCAGCACGTTTTTGACAAAAAACGT
GCTGATAGGGGGATCTATGC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MITQWIEEYLSAKIAERRSPATITTYRIRLGRFGTWVLEQPNQVLTRALLRAYSAYLAQQNISITSHYSYLNDALVLVRW
LAEEGYIQPVKTDKLKPRLPKRLPAHYTMDQIKRLLLVAELREKAMLCVLLDTGVRVSELIQLRRTSFDSEGCAMILGKG
SKDRYIWISSVTQEVLRTYIASRTDTNPALFVSHRQQKTLTISGVHQSFDRVASDAEIRNDVRRLIHSFRATFARELIKK
GLDAESLRVLMGHETIQMSLHYAQLSSHEATQNRQGVNLLEKVESCL

Sequences:

>Translated_287_residues
MITQWIEEYLSAKIAERRSPATITTYRIRLGRFGTWVLEQPNQVLTRALLRAYSAYLAQQNISITSHYSYLNDALVLVRW
LAEEGYIQPVKTDKLKPRLPKRLPAHYTMDQIKRLLLVAELREKAMLCVLLDTGVRVSELIQLRRTSFDSEGCAMILGKG
SKDRYIWISSVTQEVLRTYIASRTDTNPALFVSHRQQKTLTISGVHQSFDRVASDAEIRNDVRRLIHSFRATFARELIKK
GLDAESLRVLMGHETIQMSLHYAQLSSHEATQNRQGVNLLEKVESCL
>Mature_287_residues
MITQWIEEYLSAKIAERRSPATITTYRIRLGRFGTWVLEQPNQVLTRALLRAYSAYLAQQNISITSHYSYLNDALVLVRW
LAEEGYIQPVKTDKLKPRLPKRLPAHYTMDQIKRLLLVAELREKAMLCVLLDTGVRVSELIQLRRTSFDSEGCAMILGKG
SKDRYIWISSVTQEVLRTYIASRTDTNPALFVSHRQQKTLTISGVHQSFDRVASDAEIRNDVRRLIHSFRATFARELIKK
GLDAESLRVLMGHETIQMSLHYAQLSSHEATQNRQGVNLLEKVESCL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=288, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790244, Length=281, Percent_Identity=25.9786476868327, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32975; Mature: 32975

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITQWIEEYLSAKIAERRSPATITTYRIRLGRFGTWVLEQPNQVLTRALLRAYSAYLAQQ
CCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHC
NISITSHYSYLNDALVLVRWLAEEGYIQPVKTDKLKPRLPKRLPAHYTMDQIKRLLLVAE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LREKAMLCVLLDTGVRVSELIQLRRTSFDSEGCAMILGKGSKDRYIWISSVTQEVLRTYI
HHHHHEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHH
ASRTDTNPALFVSHRQQKTLTISGVHQSFDRVASDAEIRNDVRRLIHSFRATFARELIKK
HCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLDAESLRVLMGHETIQMSLHYAQLSSHEATQNRQGVNLLEKVESCL
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MITQWIEEYLSAKIAERRSPATITTYRIRLGRFGTWVLEQPNQVLTRALLRAYSAYLAQQ
CCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHC
NISITSHYSYLNDALVLVRWLAEEGYIQPVKTDKLKPRLPKRLPAHYTMDQIKRLLLVAE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LREKAMLCVLLDTGVRVSELIQLRRTSFDSEGCAMILGKGSKDRYIWISSVTQEVLRTYI
HHHHHEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHH
ASRTDTNPALFVSHRQQKTLTISGVHQSFDRVASDAEIRNDVRRLIHSFRATFARELIKK
HCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLDAESLRVLMGHETIQMSLHYAQLSSHEATQNRQGVNLLEKVESCL
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]