| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159897092
Identifier: 159897092
GI number: 159897092
Start: 652395
End: 653966
Strand: Reverse
Name: 159897092
Synonym: Haur_0563
Alternate gene names: NA
Gene position: 653966-652395 (Counterclockwise)
Preceding gene: 159897093
Following gene: 159897091
Centisome position: 10.3
GC content: 57.19
Gene sequence:
>1572_bases ATGCCAACAGCCTTTGACAATTTGTCGGTTGAAGCCGCCAAAAAACGCTTGCCAACCACGCCGGAAGCGGTCAAAAGCGC GGTGCTGTTTCGCGATGGCGATCACTGGCAAGGTGGCGCGGCGTGGACTGGCCCCGCTCCAGCATCAACCGATAAGGGCG CGACCGAGGTGATGACGCGTATTCAACGCGAGTTTGTTTCCAGCAATGTCATTGCCGAGGTGATTGAGCGGCATGCGAAT GGTGCAGTCGGGCGGGAACCTCAATGGAGCTATGCCCTGCGTCGTCCATTACTGGAGGAGGAACAGCCGAATACCCAAGA GCAAGCATTGCTCGATGAAGCGGAAGCCGCCATGACGAGCTGGTGGGATCAACGGAATGTGCTGGGTATCCTACAAGAAA GCATTGCCACCGCCGTGGTGCATGGCCGCGCCGTCCTGCGGTTATTTGTGCCCCCTGCCGTTGTCGAAGGCGGCGTGATT CAGCGCCAGCCCAGTTTGGCCGATGCCTTGAATCTCATTTGGTTGGATGGACTTTCACCCGAGCAGGCTGGCGTGAGCCG CGACACGGCCACGATGCAGGCCTGTGGTGTGTATGTCTACACCAACGACGCGAAACAGGAAGTGGCTGAAGTGACCTTTC TTGATGGCCTCGATACCGTGATGCGCACACTCGAAGGCGAAGCCGTTACCGGAGAAACGCGGCTGCCGCTCATGGGTCAC TTACTGATGATCGAAATCACCTGCAAACCCTTGATCGGGTTACCGATGCAGCAAATGCAGAAGGCGCTCAATATGACGTT GACGATGCTCCAACACAACATCGTGATTAGCGGATTTGTTGAGCGCGTGATGACCAATGCCCAAATGCCCTTTGATGAGG TCGATGATCCAACCAACCCGGGCAAAAAAACGCGTGTGTATCGCCCGTATGACATCGGGCCGGGCAAAACCACCAATTTG GTCGGGCTGCCGATGCGCGAAAAAGATGGACAGATTGAGCGCATCACGGGCTACACCACCCCATCGGTGCAATGGCGTGA TCCCGTTCCCGTGGGCACGTTCATTGACACCGACGCAGCAATCTATAGCCGGATGCTCAAGGAGTGCAAGCAACTGCATG CGCTGTTGAGTGGTGACGCAGTAGCGAGTGGCGAAAGTCGCAAACAAGCATTGTTGGATTTTGCGATGTCCCTAGGGCCA ACAGCTACAGCGTTGAAGCAACTGGTGCGCTGGGTGCTCGAAGCGGCCTTAGCCTTAGCGGCCCACTTTGCGGGGCGTGC CCAAGCCTTTGATTCCTTGCGGGCGGATGTCACGCCACGGTTGTGGCTGGGCAGCTTGAGCAGCGAGGAACGCAACTTCT TATTAGCCGCCTACGAAAAAGGGGCGATCAGTCACGACCTGTTCTTGAGCTTAATAGAGGTTGAAGATGTGGATGCCGAG AAAGCCCGCATTGCTGCCGAGCAGGAAGAAAAGCAGGCTCGCAGCGCCCGAAGCTTAGGTGCAGCCTTGGCGATGCAGCA AGCACGGCTCGATAGTGGCGCTGCCAGCACCGGATTGGAGCAGCCGCAATGA
Upstream 100 bases:
>100_bases ATGGCATGGGCCATCGCTCTCATGGTTGCCAGTCAACCAACGGAAGTCGAAGACGAAGCCATTGCTGGCTCGTGGGATAG CTACTAAACAAGGGGTATCG
Downstream 100 bases:
>100_bases TCGACGCGGTTGCCATTGCCAATCAATTCCGTGCTGAGCTTCAGGCCCAGAACGCGAGCGCGATGGACGATCTGACCAAA CGCTGGCGCACGGTCGAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 523; Mature: 522
Protein sequence:
>523_residues MPTAFDNLSVEAAKKRLPTTPEAVKSAVLFRDGDHWQGGAAWTGPAPASTDKGATEVMTRIQREFVSSNVIAEVIERHAN GAVGREPQWSYALRRPLLEEEQPNTQEQALLDEAEAAMTSWWDQRNVLGILQESIATAVVHGRAVLRLFVPPAVVEGGVI QRQPSLADALNLIWLDGLSPEQAGVSRDTATMQACGVYVYTNDAKQEVAEVTFLDGLDTVMRTLEGEAVTGETRLPLMGH LLMIEITCKPLIGLPMQQMQKALNMTLTMLQHNIVISGFVERVMTNAQMPFDEVDDPTNPGKKTRVYRPYDIGPGKTTNL VGLPMREKDGQIERITGYTTPSVQWRDPVPVGTFIDTDAAIYSRMLKECKQLHALLSGDAVASGESRKQALLDFAMSLGP TATALKQLVRWVLEAALALAAHFAGRAQAFDSLRADVTPRLWLGSLSSEERNFLLAAYEKGAISHDLFLSLIEVEDVDAE KARIAAEQEEKQARSARSLGAALAMQQARLDSGAASTGLEQPQ
Sequences:
>Translated_523_residues MPTAFDNLSVEAAKKRLPTTPEAVKSAVLFRDGDHWQGGAAWTGPAPASTDKGATEVMTRIQREFVSSNVIAEVIERHAN GAVGREPQWSYALRRPLLEEEQPNTQEQALLDEAEAAMTSWWDQRNVLGILQESIATAVVHGRAVLRLFVPPAVVEGGVI QRQPSLADALNLIWLDGLSPEQAGVSRDTATMQACGVYVYTNDAKQEVAEVTFLDGLDTVMRTLEGEAVTGETRLPLMGH LLMIEITCKPLIGLPMQQMQKALNMTLTMLQHNIVISGFVERVMTNAQMPFDEVDDPTNPGKKTRVYRPYDIGPGKTTNL VGLPMREKDGQIERITGYTTPSVQWRDPVPVGTFIDTDAAIYSRMLKECKQLHALLSGDAVASGESRKQALLDFAMSLGP TATALKQLVRWVLEAALALAAHFAGRAQAFDSLRADVTPRLWLGSLSSEERNFLLAAYEKGAISHDLFLSLIEVEDVDAE KARIAAEQEEKQARSARSLGAALAMQQARLDSGAASTGLEQPQ >Mature_522_residues PTAFDNLSVEAAKKRLPTTPEAVKSAVLFRDGDHWQGGAAWTGPAPASTDKGATEVMTRIQREFVSSNVIAEVIERHANG AVGREPQWSYALRRPLLEEEQPNTQEQALLDEAEAAMTSWWDQRNVLGILQESIATAVVHGRAVLRLFVPPAVVEGGVIQ RQPSLADALNLIWLDGLSPEQAGVSRDTATMQACGVYVYTNDAKQEVAEVTFLDGLDTVMRTLEGEAVTGETRLPLMGHL LMIEITCKPLIGLPMQQMQKALNMTLTMLQHNIVISGFVERVMTNAQMPFDEVDDPTNPGKKTRVYRPYDIGPGKTTNLV GLPMREKDGQIERITGYTTPSVQWRDPVPVGTFIDTDAAIYSRMLKECKQLHALLSGDAVASGESRKQALLDFAMSLGPT ATALKQLVRWVLEAALALAAHFAGRAQAFDSLRADVTPRLWLGSLSSEERNFLLAAYEKGAISHDLFLSLIEVEDVDAEK ARIAAEQEEKQARSARSLGAALAMQQARLDSGAASTGLEQPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57081; Mature: 56949
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTAFDNLSVEAAKKRLPTTPEAVKSAVLFRDGDHWQGGAAWTGPAPASTDKGATEVMTR CCCCCCCCCHHHHHHCCCCCHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH IQREFVSSNVIAEVIERHANGAVGREPQWSYALRRPLLEEEQPNTQEQALLDEAEAAMTS HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHH WWDQRNVLGILQESIATAVVHGRAVLRLFVPPAVVEGGVIQRQPSLADALNLIWLDGLSP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHEECCCCH EQAGVSRDTATMQACGVYVYTNDAKQEVAEVTFLDGLDTVMRTLEGEAVTGETRLPLMGH HHCCCCCCHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC LLMIEITCKPLIGLPMQQMQKALNMTLTMLQHNIVISGFVERVMTNAQMPFDEVDDPTNP EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC GKKTRVYRPYDIGPGKTTNLVGLPMREKDGQIERITGYTTPSVQWRDPVPVGTFIDTDAA CCCCEEECCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCHHH IYSRMLKECKQLHALLSGDAVASGESRKQALLDFAMSLGPTATALKQLVRWVLEAALALA HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH AHFAGRAQAFDSLRADVTPRLWLGSLSSEERNFLLAAYEKGAISHDLFLSLIEVEDVDAE HHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHH KARIAAEQEEKQARSARSLGAALAMQQARLDSGAASTGLEQPQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure PTAFDNLSVEAAKKRLPTTPEAVKSAVLFRDGDHWQGGAAWTGPAPASTDKGATEVMTR CCCCCCCCHHHHHHCCCCCHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH IQREFVSSNVIAEVIERHANGAVGREPQWSYALRRPLLEEEQPNTQEQALLDEAEAAMTS HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHH WWDQRNVLGILQESIATAVVHGRAVLRLFVPPAVVEGGVIQRQPSLADALNLIWLDGLSP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHEECCCCH EQAGVSRDTATMQACGVYVYTNDAKQEVAEVTFLDGLDTVMRTLEGEAVTGETRLPLMGH HHCCCCCCHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC LLMIEITCKPLIGLPMQQMQKALNMTLTMLQHNIVISGFVERVMTNAQMPFDEVDDPTNP EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC GKKTRVYRPYDIGPGKTTNLVGLPMREKDGQIERITGYTTPSVQWRDPVPVGTFIDTDAA CCCCEEECCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCHHH IYSRMLKECKQLHALLSGDAVASGESRKQALLDFAMSLGPTATALKQLVRWVLEAALALA HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH AHFAGRAQAFDSLRADVTPRLWLGSLSSEERNFLLAAYEKGAISHDLFLSLIEVEDVDAE HHHHHHHHHHHHHHHCCCCHHEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHH KARIAAEQEEKQARSARSLGAALAMQQARLDSGAASTGLEQPQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA