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The map label for this gene is sufD [H]

Identifier: 159896944

GI number: 159896944

Start: 481141

End: 482331

Strand: Reverse

Name: sufD [H]

Synonym: Haur_0412

Alternate gene names: 159896944

Gene position: 482331-481141 (Counterclockwise)

Preceding gene: 159896945

Following gene: 159896943

Centisome position: 7.6

GC content: 52.14

Gene sequence:

>1191_bases
ATGCCAGCTAATTTGCAATCTACCTTTGATCTGGCGCAATTTGAGGCTTTGTTGGCCAGTCGCAACGAGCCAAGCTGGCT
GACCAGCCGCCGTCGCGAAGCTTGGGAAGCATTCGAAACCGCTGAGCAACCAGATTGGCGACGAACCAATTTGAAGGGCT
TCAATATCGCTGATTACACGCTGGCTGAGGCCGAAGTTTCAGTTGATTTTGCTGGCGCGGAAGGCGTGACGATTCTGCCT
TTAGCCGAAGCGATTCAAAGCCACGCCGAATTGGTGCAACGAGTGCTTGGCAGCGCCGTCCAAACCAGCCGCGATCCATT
TTCAGCGCTCAATAATGCTTTGGTCAACGGCGGGATTTTTATTCACGTTGCCAAAGATGTTGCGGTTGAAGAGTTGGTGC
GGATTCGCTATCACCTCAGCAATGCTGGCACGGTTGTCGCCCCCCGCACATTAATCGTCACCGAGCGCCATAGCTCGATC
AACGTGATCGAAGAAATTAGCTCAGCTGATTTTGCCGGTAGCGCAGTGGTCTTGACCGGGGCTGAAATTGAGGTTGGCGA
TGGTGGCCAAGTTGGCTTCAGCAGCGTGCAAACCTTGAACAGCAATGTCTATCTGTTGGGCAGCCAACAAATTCGTATCA
ACCGCGATGCCCAAGCCGAATGGCTCAACGTGGTGGTTGGTAGCGCTGTGCAGCACGTAACCTTGGAAGCCAATTTGAGC
GGCAACGGCTCAAGCGTCAATTGGAATGGCTTGTTGTATGGCAATGGCAAGCAAAACTTGCTGGTTGCGCCCAAGCTCAA
TCACATTGGCTTGAATACCGAAGGCCAAATCAACTTCAAAACCGTGGTTGATGATGAAGCCTATGCCGTTTTCGATGGCA
TGGTCAAAATCCCTGCCACTGGACAAGGAACCAACTCCGACTTGCGCGAAAATGCCTTGCACTTGAGCAAAAATTCACGC
TCGGATTCAATTCCAGGCTTGGAGATTGATGCCAATGAAGTTAAGGCAGGCCACGGCTCAACCAGCGGCCAAATCGACGA
AGAGCAGTTGTTCTATCTGCAATCACGCGGTTTGCCGTTTGCCGAAGCCAAGCGCACGATCGTGTTGGGCTTTGTCGGCG
AAATCATCGATATGATTCCTGATGAAGCTGTCCGCGAACGGGTCGAAACCATCGTCGCCGAAAAAGTCTAA

Upstream 100 bases:

>100_bases
GTTTTGATGAACGGCCAAATTGTGCGCGAAGGCGGCCCCGACATGGCCTTAGAACTCGAAGAAAAAGGTTACGATTTCAT
TCGAGAGGAAGTGTTCGGCA

Downstream 100 bases:

>100_bases
CGATTTGATCCACGAAGGGCACGAAGGACACGAAGGATGTTTTTTGTGTGATCCCAAAAATAGTTAGTTTATGTATCTAG
TTACAGCGACGAACTAACTA

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MPANLQSTFDLAQFEALLASRNEPSWLTSRRREAWEAFETAEQPDWRRTNLKGFNIADYTLAEAEVSVDFAGAEGVTILP
LAEAIQSHAELVQRVLGSAVQTSRDPFSALNNALVNGGIFIHVAKDVAVEELVRIRYHLSNAGTVVAPRTLIVTERHSSI
NVIEEISSADFAGSAVVLTGAEIEVGDGGQVGFSSVQTLNSNVYLLGSQQIRINRDAQAEWLNVVVGSAVQHVTLEANLS
GNGSSVNWNGLLYGNGKQNLLVAPKLNHIGLNTEGQINFKTVVDDEAYAVFDGMVKIPATGQGTNSDLRENALHLSKNSR
SDSIPGLEIDANEVKAGHGSTSGQIDEEQLFYLQSRGLPFAEAKRTIVLGFVGEIIDMIPDEAVRERVETIVAEKV

Sequences:

>Translated_396_residues
MPANLQSTFDLAQFEALLASRNEPSWLTSRRREAWEAFETAEQPDWRRTNLKGFNIADYTLAEAEVSVDFAGAEGVTILP
LAEAIQSHAELVQRVLGSAVQTSRDPFSALNNALVNGGIFIHVAKDVAVEELVRIRYHLSNAGTVVAPRTLIVTERHSSI
NVIEEISSADFAGSAVVLTGAEIEVGDGGQVGFSSVQTLNSNVYLLGSQQIRINRDAQAEWLNVVVGSAVQHVTLEANLS
GNGSSVNWNGLLYGNGKQNLLVAPKLNHIGLNTEGQINFKTVVDDEAYAVFDGMVKIPATGQGTNSDLRENALHLSKNSR
SDSIPGLEIDANEVKAGHGSTSGQIDEEQLFYLQSRGLPFAEAKRTIVLGFVGEIIDMIPDEAVRERVETIVAEKV
>Mature_395_residues
PANLQSTFDLAQFEALLASRNEPSWLTSRRREAWEAFETAEQPDWRRTNLKGFNIADYTLAEAEVSVDFAGAEGVTILPL
AEAIQSHAELVQRVLGSAVQTSRDPFSALNNALVNGGIFIHVAKDVAVEELVRIRYHLSNAGTVVAPRTLIVTERHSSIN
VIEEISSADFAGSAVVLTGAEIEVGDGGQVGFSSVQTLNSNVYLLGSQQIRINRDAQAEWLNVVVGSAVQHVTLEANLSG
NGSSVNWNGLLYGNGKQNLLVAPKLNHIGLNTEGQINFKTVVDDEAYAVFDGMVKIPATGQGTNSDLRENALHLSKNSRS
DSIPGLEIDANEVKAGHGSTSGQIDEEQLFYLQSRGLPFAEAKRTIVLGFVGEIIDMIPDEAVRERVETIVAEKV

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=316, Percent_Identity=25, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787971, Length=309, Percent_Identity=26.537216828479, Blast_Score=99, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 42789; Mature: 42658

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPANLQSTFDLAQFEALLASRNEPSWLTSRRREAWEAFETAEQPDWRRTNLKGFNIADYT
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE
LAEAEVSVDFAGAEGVTILPLAEAIQSHAELVQRVLGSAVQTSRDPFSALNNALVNGGIF
EEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEE
IHVAKDVAVEELVRIRYHLSNAGTVVAPRTLIVTERHSSINVIEEISSADFAGSAVVLTG
EEEECHHHHHHHHHHHHHHCCCCEEEECEEEEEEECCCCHHHHHHHHCCCCCCCEEEEEC
AEIEVGDGGQVGFSSVQTLNSNVYLLGSQQIRINRDAQAEWLNVVVGSAVQHVTLEANLS
CEEEECCCCCCCHHHHHCCCCCEEEEECCEEEECCCCHHHHHHHHHHCCEEEEEEEEEEC
GNGSSVNWNGLLYGNGKQNLLVAPKLNHIGLNTEGQINFKTVVDDEAYAVFDGMVKIPAT
CCCCEEEEEEEEEECCCCCEEEECCCCEECCCCCCCEEEEEEECCCCEEEECCEEEECCC
GQGTNSDLRENALHLSKNSRSDSIPGLEIDANEVKAGHGSTSGQIDEEQLFYLQSRGLPF
CCCCCCHHHHHHHHCCCCCCCCCCCCEEECHHHHCCCCCCCCCCCCHHHHHEEHHCCCCH
AEAKRTIVLGFVGEIIDMIPDEAVRERVETIVAEKV
HHCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PANLQSTFDLAQFEALLASRNEPSWLTSRRREAWEAFETAEQPDWRRTNLKGFNIADYT
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE
LAEAEVSVDFAGAEGVTILPLAEAIQSHAELVQRVLGSAVQTSRDPFSALNNALVNGGIF
EEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEE
IHVAKDVAVEELVRIRYHLSNAGTVVAPRTLIVTERHSSINVIEEISSADFAGSAVVLTG
EEEECHHHHHHHHHHHHHHCCCCEEEECEEEEEEECCCCHHHHHHHHCCCCCCCEEEEEC
AEIEVGDGGQVGFSSVQTLNSNVYLLGSQQIRINRDAQAEWLNVVVGSAVQHVTLEANLS
CEEEECCCCCCCHHHHHCCCCCEEEEECCEEEECCCCHHHHHHHHHHCCEEEEEEEEEEC
GNGSSVNWNGLLYGNGKQNLLVAPKLNHIGLNTEGQINFKTVVDDEAYAVFDGMVKIPAT
CCCCEEEEEEEEEECCCCCEEEECCCCEECCCCCCCEEEEEEECCCCEEEECCEEEECCC
GQGTNSDLRENALHLSKNSRSDSIPGLEIDANEVKAGHGSTSGQIDEEQLFYLQSRGLPF
CCCCCCHHHHHHHHCCCCCCCCCCCCEEECHHHHCCCCCCCCCCCCHHHHHEEHHCCCCH
AEAKRTIVLGFVGEIIDMIPDEAVRERVETIVAEKV
HHCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]