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The map label for this gene is cmpR [H]

Identifier: 159896928

GI number: 159896928

Start: 464627

End: 465529

Strand: Reverse

Name: cmpR [H]

Synonym: Haur_0396

Alternate gene names: 159896928

Gene position: 465529-464627 (Counterclockwise)

Preceding gene: 159896929

Following gene: 159896927

Centisome position: 7.34

GC content: 52.93

Gene sequence:

>903_bases
ATGTTGGATTTACAAAAATTACGGATGTTTGTGGCAGCGGCGCAAAGTCGCAATTTTACCCGCGCTGCCGAGCAACTTGA
CCTAACTCAACCAACCGTGAGCCAGCAAATTCAAACGCTTGAGCGCGAATTAGGCGTTAGTTTGTTTGAGCGGCTAAGTC
GTGGAATTGAGCTAACAGCGGCTGGGCGGGCGCTCTTGCCGCATGCCGAGCAAATGATCGCCCTCGAACGGATTGCCGAG
CAAGCAGTGCGGGCTGCGGCTGGTCAAAGTGAACGTACCTTGCTCTTGGGCGTTGGCAATACCTTGGCAACCTATGCCCT
GCCCGATTTGCTGCAACGCTTCAACTGGGAACACCCTGCGTTTGTGGTGCATATTGGCACAGGCAACACGGAACAATTGC
TGGCTCAAGTCATTTCGGGCGAGTTTGAATTGGCCTTGGTTGGCTCGCCAATTGTCCATACCCAATTGATCATTATGCCG
TTTTTGACGACTGAATTGGTCGTGATTGTCAGCCCTGATGACCCATGGGCACGCTTAAAACAAATTAACATCGAGGCCTT
ACACGGGCGACGCATGCTCTTGCGCGAGGAAGGCTCCGCCTTGCAAGCCAGCGTCAGCGAATTGCTCAATGCTCAGCAAA
TTCGCCCTAAACAACCAATTGTGCTAGGAAATTTAGAGGCGATCAAGCGTTCGGTTGAGGTTGGCTTGGGCATCGCCTTA
GTGCCAGCTATGGCCGTGCGCCGCGAAGTGGCGGCTGGGCGTTTGCGTCAAATTCATTTAGCCAATGTGCCAACCCGCCG
CGTTTATAACGTCGTGCATCATCGCGACCGCCATATTACCAACGCCGCTCAACTATTCCTTGACCTTTTGCGCAAACCCT
TGGGTCCTGATACTAACGAATGA

Upstream 100 bases:

>100_bases
CAACCAAGTGTCTATCGCAGCATCGTTAAGGTGCTGCGATTTTTGATCGGCGCAAACTTATGCTACAGTGCAGGCCACAA
TCACCACAGCGAGAACACCT

Downstream 100 bases:

>100_bases
GCAGTTGATATGCTATGATATGGGCTATTGCTTCCGACCACCTTTTGGAGCAGAACCCGTTATGGGCGTGGGGGAATGGC
CTGCATGACCGATGCAGAAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLDLQKLRMFVAAAQSRNFTRAAEQLDLTQPTVSQQIQTLERELGVSLFERLSRGIELTAAGRALLPHAEQMIALERIAE
QAVRAAAGQSERTLLLGVGNTLATYALPDLLQRFNWEHPAFVVHIGTGNTEQLLAQVISGEFELALVGSPIVHTQLIIMP
FLTTELVVIVSPDDPWARLKQINIEALHGRRMLLREEGSALQASVSELLNAQQIRPKQPIVLGNLEAIKRSVEVGLGIAL
VPAMAVRREVAAGRLRQIHLANVPTRRVYNVVHHRDRHITNAAQLFLDLLRKPLGPDTNE

Sequences:

>Translated_300_residues
MLDLQKLRMFVAAAQSRNFTRAAEQLDLTQPTVSQQIQTLERELGVSLFERLSRGIELTAAGRALLPHAEQMIALERIAE
QAVRAAAGQSERTLLLGVGNTLATYALPDLLQRFNWEHPAFVVHIGTGNTEQLLAQVISGEFELALVGSPIVHTQLIIMP
FLTTELVVIVSPDDPWARLKQINIEALHGRRMLLREEGSALQASVSELLNAQQIRPKQPIVLGNLEAIKRSVEVGLGIAL
VPAMAVRREVAAGRLRQIHLANVPTRRVYNVVHHRDRHITNAAQLFLDLLRKPLGPDTNE
>Mature_300_residues
MLDLQKLRMFVAAAQSRNFTRAAEQLDLTQPTVSQQIQTLERELGVSLFERLSRGIELTAAGRALLPHAEQMIALERIAE
QAVRAAAGQSERTLLLGVGNTLATYALPDLLQRFNWEHPAFVVHIGTGNTEQLLAQVISGEFELALVGSPIVHTQLIIMP
FLTTELVVIVSPDDPWARLKQINIEALHGRRMLLREEGSALQASVSELLNAQQIRPKQPIVLGNLEAIKRSVEVGLGIAL
VPAMAVRREVAAGRLRQIHLANVPTRRVYNVVHHRDRHITNAAQLFLDLLRKPLGPDTNE

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=287, Percent_Identity=29.616724738676, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1790399, Length=252, Percent_Identity=29.3650793650794, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI145693105, Length=294, Percent_Identity=26.530612244898, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788887, Length=267, Percent_Identity=29.9625468164794, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787530, Length=252, Percent_Identity=26.1904761904762, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790208, Length=243, Percent_Identity=27.9835390946502, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI157672245, Length=290, Percent_Identity=26.2068965517241, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082132, Length=318, Percent_Identity=25.7861635220126, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787879, Length=245, Percent_Identity=26.530612244898, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787806, Length=244, Percent_Identity=27.8688524590164, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787601, Length=297, Percent_Identity=22.8956228956229, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788297, Length=263, Percent_Identity=27.7566539923954, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87081904, Length=298, Percent_Identity=23.489932885906, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=23.3449477351916, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1786713, Length=249, Percent_Identity=27.3092369477912, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=21.9931271477663, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI48994962, Length=93, Percent_Identity=40.8602150537634, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788296, Length=247, Percent_Identity=23.8866396761134, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI2367136, Length=122, Percent_Identity=38.5245901639344, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=272, Percent_Identity=24.6323529411765, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33242; Mature: 33242

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLQKLRMFVAAAQSRNFTRAAEQLDLTQPTVSQQIQTLERELGVSLFERLSRGIELTA
CCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
AGRALLPHAEQMIALERIAEQAVRAAAGQSERTLLLGVGNTLATYALPDLLQRFNWEHPA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCE
FVVHIGTGNTEQLLAQVISGEFELALVGSPIVHTQLIIMPFLTTELVVIVSPDDPWARLK
EEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCEEEEECCCCHHHHHH
QINIEALHGRRMLLREEGSALQASVSELLNAQQIRPKQPIVLGNLEAIKRSVEVGLGIAL
HCCHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHCCHHHH
VPAMAVRREVAAGRLRQIHLANVPTRRVYNVVHHRDRHITNAAQLFLDLLRKPLGPDTNE
HHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLDLQKLRMFVAAAQSRNFTRAAEQLDLTQPTVSQQIQTLERELGVSLFERLSRGIELTA
CCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
AGRALLPHAEQMIALERIAEQAVRAAAGQSERTLLLGVGNTLATYALPDLLQRFNWEHPA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCE
FVVHIGTGNTEQLLAQVISGEFELALVGSPIVHTQLIIMPFLTTELVVIVSPDDPWARLK
EEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCEEEEECCCCHHHHHH
QINIEALHGRRMLLREEGSALQASVSELLNAQQIRPKQPIVLGNLEAIKRSVEVGLGIAL
HCCHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHCCHHHH
VPAMAVRREVAAGRLRQIHLANVPTRRVYNVVHHRDRHITNAAQLFLDLLRKPLGPDTNE
HHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]