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The map label for this gene is rpoE [H]

Identifier: 159896927

GI number: 159896927

Start: 463955

End: 464542

Strand: Reverse

Name: rpoE [H]

Synonym: Haur_0395

Alternate gene names: 159896927

Gene position: 464542-463955 (Counterclockwise)

Preceding gene: 159896928

Following gene: 159896926

Centisome position: 7.32

GC content: 51.7

Gene sequence:

>588_bases
ATGACCGATGCAGAACGACAATGGGTTAGCGCCGCCAAGGATGGCGACGTTGAAGCCTTCAATCAATTAGTGCGTATGTA
CGAAGGACGAGTCTATGGCTTGGCTTATCGTATGCTTGGCGATAGCGATAGCGCCGCCGATGTAGCTCAAGATACCTTTA
TCTCAGCATTTAAGGCGATCAAGCGTTTTCGCGAAGGCTCGTTTGCCGCTTGGCTGCTGCGCATCGCCACCAACGCTTGC
TACGATGTGTTGCGAGCGCAAAAACGCCGCCGTACCACCTCGATGGATCAATTGCTCGCTGGCGATGATGATAGTCCAGG
CGAGCAATTCGAGGATCAATCGTTGCCGCTCGATCAGCATATGATCAATCGCGAGTTGCAAGCAGCGATTCAAGCAGGAT
TAGCAACCTTGCCCGAAGATCAACGCGCAGTCTTAATTATGTGTGATATTCAAGGCTTTGCCTACGAAGAAATCGCGGCG
GCTACTGATACCCAACTGGGGACGGTCAAATCGCGGCTCAGTCGTGCACGGGCAAAGTTACGCGATTATCTTAAAAGTCG
GGAACTTTTGCCAACTGCCGAACGTTAA

Upstream 100 bases:

>100_bases
TGATACTAACGAATGAGCAGTTGATATGCTATGATATGGGCTATTGCTTCCGACCACCTTTTGGAGCAGAACCCGTTATG
GGCGTGGGGGAATGGCCTGC

Downstream 100 bases:

>100_bases
GCGTGATATGACTACACAAGTGGGTATGCAATGACACCAATATCTGAACAACAACAAGAACTTCTTTCGGCAGCCCTTGA
TGGTCAGCTTAGCGCCGCCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MTDAERQWVSAAKDGDVEAFNQLVRMYEGRVYGLAYRMLGDSDSAADVAQDTFISAFKAIKRFREGSFAAWLLRIATNAC
YDVLRAQKRRRTTSMDQLLAGDDDSPGEQFEDQSLPLDQHMINRELQAAIQAGLATLPEDQRAVLIMCDIQGFAYEEIAA
ATDTQLGTVKSRLSRARAKLRDYLKSRELLPTAER

Sequences:

>Translated_195_residues
MTDAERQWVSAAKDGDVEAFNQLVRMYEGRVYGLAYRMLGDSDSAADVAQDTFISAFKAIKRFREGSFAAWLLRIATNAC
YDVLRAQKRRRTTSMDQLLAGDDDSPGEQFEDQSLPLDQHMINRELQAAIQAGLATLPEDQRAVLIMCDIQGFAYEEIAA
ATDTQLGTVKSRLSRARAKLRDYLKSRELLPTAER
>Mature_194_residues
TDAERQWVSAAKDGDVEAFNQLVRMYEGRVYGLAYRMLGDSDSAADVAQDTFISAFKAIKRFREGSFAAWLLRIATNACY
DVLRAQKRRRTTSMDQLLAGDDDSPGEQFEDQSLPLDQHMINRELQAAIQAGLATLPEDQRAVLIMCDIQGFAYEEIAAA
TDTQLGTVKSRLSRARAKLRDYLKSRELLPTAER

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=170, Percent_Identity=36.4705882352941, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21904; Mature: 21773

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAERQWVSAAKDGDVEAFNQLVRMYEGRVYGLAYRMLGDSDSAADVAQDTFISAFKAI
CCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
KRFREGSFAAWLLRIATNACYDVLRAQKRRRTTSMDQLLAGDDDSPGEQFEDQSLPLDQH
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
MINRELQAAIQAGLATLPEDQRAVLIMCDIQGFAYEEIAAATDTQLGTVKSRLSRARAKL
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH
RDYLKSRELLPTAER
HHHHHHCCCCCCCCC
>Mature Secondary Structure 
TDAERQWVSAAKDGDVEAFNQLVRMYEGRVYGLAYRMLGDSDSAADVAQDTFISAFKAI
CCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
KRFREGSFAAWLLRIATNACYDVLRAQKRRRTTSMDQLLAGDDDSPGEQFEDQSLPLDQH
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
MINRELQAAIQAGLATLPEDQRAVLIMCDIQGFAYEEIAAATDTQLGTVKSRLSRARAKL
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH
RDYLKSRELLPTAER
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]