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The map label for this gene is ylbK [H]

Identifier: 159896867

GI number: 159896867

Start: 398622

End: 399461

Strand: Reverse

Name: ylbK [H]

Synonym: Haur_0334

Alternate gene names: 159896867

Gene position: 399461-398622 (Counterclockwise)

Preceding gene: 159896868

Following gene: 159896866

Centisome position: 6.29

GC content: 52.26

Gene sequence:

>840_bases
ATGCAACGGACGATTGGTTTATGTCTTGGTGGCGGGGGTGGCAAGGGCAGTGCCCATATTGGCGTGCTCCATGAATTAGA
ACGGGTTGGCATCCAAGCAAATATGGTGGCTGGAACCAGCATTGGGGCCATTATTGGGGCCGTGGTGGCGGCAGGCTACA
ATGCGACGACGATTGAGCAGGCTTTTCGTGCCACGCCGTTGCGCCGAATTCTCAGCCTTGATCCAGCAAGTTGGGGCTTG
ATTGGCTCGGAAAAATTGGCTGGCGTGCTCAGCGAATTATTGGGCGATCAACTGATCGAAGATTTGCCGATACCCTATGC
GGCAGTGGCGGTTGATTTGGTGACTGGGCATGAGGTGGTATTGCAACGTGGCTCGTTGGTTGAGGCTGCCTTGGCGAGTG
CGGCAGTGCCTGGGGTGTTTCCGCCCCGCCGCATCGAGAAATATATTTTGGCCGATGGTGGCATCCGTAATAATTTGCCA
ATTGACATCACTCGTCAACTTGGAGCCGAACGGGTGATTGCAGTTAATTTGATTGGTGAATTCGATCAATTTGAGGTAAA
TAATGCCGCCCAAAGCAGCCTCTTTTCGTGGCGACGCTGGGTTCCGCTCACGCAATTGGCCTTAGCTGAGCGAGCAATTG
GGATTATGGTGCATCAAATTACTTTGCAACGTTTGCGCGAAACCCCGCCTGATCTACTCTTCAGCCCCGATGTAAATCGC
ATGAGTATGGCCGATTTACTGCACCTTGATGATGGAATTCAAGCGGGGATTGCCTGTGTTGCTGATTATTATGAAGAATT
GCAACAATGGGCGCTTTGGCAGCGCGGCGAATTTGCCTAA

Upstream 100 bases:

>100_bases
AGGGGGTGAGGGAACTTAAAACCTATCCTTGTAAGAGTCCCTGACTCCTATACCGTGTTATACTCTAACGCAGCGCGTCA
TTCAATCAAGGAGTTGGGCC

Downstream 100 bases:

>100_bases
GCTAAAATCGAGTACACTCTAGACCGTCATTGAGCCGACCGATTTGGTCGAAGGAGCATCTATGCGGTTGATTAGTTATT
TTCTATTTATTTGTGGCTTA

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MQRTIGLCLGGGGGKGSAHIGVLHELERVGIQANMVAGTSIGAIIGAVVAAGYNATTIEQAFRATPLRRILSLDPASWGL
IGSEKLAGVLSELLGDQLIEDLPIPYAAVAVDLVTGHEVVLQRGSLVEAALASAAVPGVFPPRRIEKYILADGGIRNNLP
IDITRQLGAERVIAVNLIGEFDQFEVNNAAQSSLFSWRRWVPLTQLALAERAIGIMVHQITLQRLRETPPDLLFSPDVNR
MSMADLLHLDDGIQAGIACVADYYEELQQWALWQRGEFA

Sequences:

>Translated_279_residues
MQRTIGLCLGGGGGKGSAHIGVLHELERVGIQANMVAGTSIGAIIGAVVAAGYNATTIEQAFRATPLRRILSLDPASWGL
IGSEKLAGVLSELLGDQLIEDLPIPYAAVAVDLVTGHEVVLQRGSLVEAALASAAVPGVFPPRRIEKYILADGGIRNNLP
IDITRQLGAERVIAVNLIGEFDQFEVNNAAQSSLFSWRRWVPLTQLALAERAIGIMVHQITLQRLRETPPDLLFSPDVNR
MSMADLLHLDDGIQAGIACVADYYEELQQWALWQRGEFA
>Mature_279_residues
MQRTIGLCLGGGGGKGSAHIGVLHELERVGIQANMVAGTSIGAIIGAVVAAGYNATTIEQAFRATPLRRILSLDPASWGL
IGSEKLAGVLSELLGDQLIEDLPIPYAAVAVDLVTGHEVVLQRGSLVEAALASAAVPGVFPPRRIEKYILADGGIRNNLP
IDITRQLGAERVIAVNLIGEFDQFEVNNAAQSSLFSWRRWVPLTQLALAERAIGIMVHQITLQRLRETPPDLLFSPDVNR
MSMADLLHLDDGIQAGIACVADYYEELQQWALWQRGEFA

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656039, Length=205, Percent_Identity=35.609756097561, Blast_Score=111, Evalue=6e-25,
Organism=Homo sapiens, GI260656041, Length=205, Percent_Identity=35.609756097561, Blast_Score=111, Evalue=7e-25,
Organism=Homo sapiens, GI116256487, Length=205, Percent_Identity=35.609756097561, Blast_Score=111, Evalue=7e-25,
Organism=Homo sapiens, GI260656037, Length=205, Percent_Identity=35.609756097561, Blast_Score=111, Evalue=7e-25,
Organism=Homo sapiens, GI260656043, Length=205, Percent_Identity=35.609756097561, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI148727335, Length=210, Percent_Identity=34.7619047619048, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI148727290, Length=210, Percent_Identity=34.7619047619048, Blast_Score=108, Evalue=6e-24,
Organism=Escherichia coli, GI226510936, Length=289, Percent_Identity=31.8339100346021, Blast_Score=120, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI71997299, Length=166, Percent_Identity=32.5301204819277, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71997289, Length=166, Percent_Identity=32.5301204819277, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193204778, Length=187, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323581, Length=271, Percent_Identity=25.830258302583, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281376913, Length=213, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28571388, Length=213, Percent_Identity=33.8028169014084, Blast_Score=97, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 30033; Mature: 30033

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRTIGLCLGGGGGKGSAHIGVLHELERVGIQANMVAGTSIGAIIGAVVAAGYNATTIEQ
CCCEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHH
AFRATPLRRILSLDPASWGLIGSEKLAGVLSELLGDQLIEDLPIPYAAVAVDLVTGHEVV
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHH
LQRGSLVEAALASAAVPGVFPPRRIEKYILADGGIRNNLPIDITRQLGAERVIAVNLIGE
HHCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEEEECCC
FDQFEVNNAAQSSLFSWRRWVPLTQLALAERAIGIMVHQITLQRLRETPPDLLFSPDVNR
CCHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCH
MSMADLLHLDDGIQAGIACVADYYEELQQWALWQRGEFA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQRTIGLCLGGGGGKGSAHIGVLHELERVGIQANMVAGTSIGAIIGAVVAAGYNATTIEQ
CCCEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHH
AFRATPLRRILSLDPASWGLIGSEKLAGVLSELLGDQLIEDLPIPYAAVAVDLVTGHEVV
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHH
LQRGSLVEAALASAAVPGVFPPRRIEKYILADGGIRNNLPIDITRQLGAERVIAVNLIGE
HHCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEEEECCC
FDQFEVNNAAQSSLFSWRRWVPLTQLALAERAIGIMVHQITLQRLRETPPDLLFSPDVNR
CCHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCH
MSMADLLHLDDGIQAGIACVADYYEELQQWALWQRGEFA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]