| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159896866
Identifier: 159896866
GI number: 159896866
Start: 397853
End: 398560
Strand: Reverse
Name: 159896866
Synonym: Haur_0333
Alternate gene names: NA
Gene position: 398560-397853 (Counterclockwise)
Preceding gene: 159896867
Following gene: 159896864
Centisome position: 6.28
GC content: 45.76
Gene sequence:
>708_bases ATGCGGTTGATTAGTTATTTTCTATTTATTTGTGGCTTAGTTGCCTGTGGTGGCGCAACGGCAACGCCAATTCCAGCAAC ACAGGTGGTTGCTCAAGTAAGCACGGCAACCCCTGAGCCAACCTTGGTTCAGCCAACCCTTACACCCACGATTCCCCCGA CGTTTACGCCACTCCCACGGGTAACCCCAACCGTAGCCGATTTGGGCAATATTCCAGGTAATAGCACAGCTTTTATCGAA ATTAAAGGCTTGAAAACCTATACCAATCCCACCCAAGCCTTTTCAATCGACATACCTGACGATTGGCAAATGCGTGATAG CGTTGATGCTGGCAATAATTTGCTCTTTTGGGTTGATCCCGCTGAGCAAGCGTTTATTCAATTGTTAGTGGTTGATGATA GCCAGAATTTAATTGGCGACCAAGCTGAGTTTTTGAACGATTTTATTAGCCAAATTGTCGGGCAATCGTCGGAGTTTAAT ATCGATCAGCCAGTGTTGCAAGCCGATGGCAACACCTATGTTTCGTATAGTTTTATTGATCAGCAAAGTTTGCTGGCGAT GAGTGGCGATGGCTATGTGCGGCGTGATGGCAACTATCTTAGCATCATTCAGATTTTAGTGCCGTTGGAGCAATTTGAGG CCTTGCAACCAGATCTTGTGCGGATTGTTCAGAGCTACAAGATTGATCCTAATCTGCCATTGCAATAA
Upstream 100 bases:
>100_bases CAACAATGGGCGCTTTGGCAGCGCGGCGAATTTGCCTAAGCTAAAATCGAGTACACTCTAGACCGTCATTGAGCCGACCG ATTTGGTCGAAGGAGCATCT
Downstream 100 bases:
>100_bases TTAACAAAACAGGGATGGCCGCAACCATCCCTGCTTTGGCAACAACTCTAGAAATCGCAACCCATGCGGGTCATTGGCAA ATAGACATTGAAATCACCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MRLISYFLFICGLVACGGATATPIPATQVVAQVSTATPEPTLVQPTLTPTIPPTFTPLPRVTPTVADLGNIPGNSTAFIE IKGLKTYTNPTQAFSIDIPDDWQMRDSVDAGNNLLFWVDPAEQAFIQLLVVDDSQNLIGDQAEFLNDFISQIVGQSSEFN IDQPVLQADGNTYVSYSFIDQQSLLAMSGDGYVRRDGNYLSIIQILVPLEQFEALQPDLVRIVQSYKIDPNLPLQ
Sequences:
>Translated_235_residues MRLISYFLFICGLVACGGATATPIPATQVVAQVSTATPEPTLVQPTLTPTIPPTFTPLPRVTPTVADLGNIPGNSTAFIE IKGLKTYTNPTQAFSIDIPDDWQMRDSVDAGNNLLFWVDPAEQAFIQLLVVDDSQNLIGDQAEFLNDFISQIVGQSSEFN IDQPVLQADGNTYVSYSFIDQQSLLAMSGDGYVRRDGNYLSIIQILVPLEQFEALQPDLVRIVQSYKIDPNLPLQ >Mature_235_residues MRLISYFLFICGLVACGGATATPIPATQVVAQVSTATPEPTLVQPTLTPTIPPTFTPLPRVTPTVADLGNIPGNSTAFIE IKGLKTYTNPTQAFSIDIPDDWQMRDSVDAGNNLLFWVDPAEQAFIQLLVVDDSQNLIGDQAEFLNDFISQIVGQSSEFN IDQPVLQADGNTYVSYSFIDQQSLLAMSGDGYVRRDGNYLSIIQILVPLEQFEALQPDLVRIVQSYKIDPNLPLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25724; Mature: 25724
Theoretical pI: Translated: 3.74; Mature: 3.74
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLISYFLFICGLVACGGATATPIPATQVVAQVSTATPEPTLVQPTLTPTIPPTFTPLPR CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC VTPTVADLGNIPGNSTAFIEIKGLKTYTNPTQAFSIDIPDDWQMRDSVDAGNNLLFWVDP CCCCHHHHCCCCCCCEEEEEEECCEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECC AEQAFIQLLVVDDSQNLIGDQAEFLNDFISQIVGQSSEFNIDQPVLQADGNTYVSYSFID CCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCEEEEEEEEC QQSLLAMSGDGYVRRDGNYLSIIQILVPLEQFEALQPDLVRIVQSYKIDPNLPLQ CCEEEEECCCCEEEECCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MRLISYFLFICGLVACGGATATPIPATQVVAQVSTATPEPTLVQPTLTPTIPPTFTPLPR CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC VTPTVADLGNIPGNSTAFIEIKGLKTYTNPTQAFSIDIPDDWQMRDSVDAGNNLLFWVDP CCCCHHHHCCCCCCCEEEEEEECCEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECC AEQAFIQLLVVDDSQNLIGDQAEFLNDFISQIVGQSSEFNIDQPVLQADGNTYVSYSFID CCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCEEEEEEEEC QQSLLAMSGDGYVRRDGNYLSIIQILVPLEQFEALQPDLVRIVQSYKIDPNLPLQ CCEEEEECCCCEEEECCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA