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The map label for this gene is rnhB

Identifier: 159896757

GI number: 159896757

Start: 260701

End: 261324

Strand: Reverse

Name: rnhB

Synonym: Haur_0224

Alternate gene names: 159896757

Gene position: 261324-260701 (Counterclockwise)

Preceding gene: 159896758

Following gene: 159896756

Centisome position: 4.12

GC content: 55.13

Gene sequence:

>624_bases
ATGACAATTGGAATTCACGAAGAACAACAACTTTGGCGCAACGGTGCGCGAATCGTCGCAGGAGTCGATGAAGTTGGTCG
AGGCTGCTGGGCTGGCCCAGTTGTCGCCGCAGCCGTCAGCTTCCCAACCCATTTGCTCAACGACCCTGTGGCCTTGGCAG
GCATCAACGATTCGAAAACCTTGAGTGCCGAAGCTCGTCAGGCGATGGCCCAACAGATTCGCCACTTGGCCAGCGGGATT
GGCCTCGGCGTGGTTTCGGCCCATCTGATCGATTTATTTGGGATTGCCGAAGCTACCAAATGGGCTATGATGCATGCGGT
TTTAAGCCTGCCAAGCTTGCCCGATGGATTAGTGATCGATTGGGTTAAATTGCCCGAATTGCCATTATTGCAACGCTCGC
TGCCCAAAGGCGATGCAATCAGCATTTCGGTGGCAGCGGCCTCAATTATCGCCAAAGTCTATCGCGATAACTTGATGCAC
GAATACGACCAACGTGACCCGCGTTATGGCTGGGCCGCGCATAAAGGCTATGGCACAGCCCAGCATCAACGAGCCTTGGC
AGCCCACGGCCCATCGGGCTTACATCGACGCTCGTTCAAGCCACTAGCAGCCTTCGTTGATTGA

Upstream 100 bases:

>100_bases
AATCTTCATCGCCGAAAAAGCTAACCAATTAATTGATATTAGACTGGATTAGGGTCTGACTCAACCCAGCCCCCAATCCC
CAGCCCCCAACAACCAACCT

Downstream 100 bases:

>100_bases
CAAAATCGCCAGAGAATGATACTAAGGTCAAACATGGCTTTTATGGAGTGTTGATATGCCTTCGCCATATTATGATCAGG
GGCGGCGTGATGCGGAAAAT

Product: ribonuclease H

Products: NA

Alternate protein names: RNase HII

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MTIGIHEEQQLWRNGARIVAGVDEVGRGCWAGPVVAAAVSFPTHLLNDPVALAGINDSKTLSAEARQAMAQQIRHLASGI
GLGVVSAHLIDLFGIAEATKWAMMHAVLSLPSLPDGLVIDWVKLPELPLLQRSLPKGDAISISVAAASIIAKVYRDNLMH
EYDQRDPRYGWAAHKGYGTAQHQRALAAHGPSGLHRRSFKPLAAFVD

Sequences:

>Translated_207_residues
MTIGIHEEQQLWRNGARIVAGVDEVGRGCWAGPVVAAAVSFPTHLLNDPVALAGINDSKTLSAEARQAMAQQIRHLASGI
GLGVVSAHLIDLFGIAEATKWAMMHAVLSLPSLPDGLVIDWVKLPELPLLQRSLPKGDAISISVAAASIIAKVYRDNLMH
EYDQRDPRYGWAAHKGYGTAQHQRALAAHGPSGLHRRSFKPLAAFVD
>Mature_206_residues
TIGIHEEQQLWRNGARIVAGVDEVGRGCWAGPVVAAAVSFPTHLLNDPVALAGINDSKTLSAEARQAMAQQIRHLASGIG
LGVVSAHLIDLFGIAEATKWAMMHAVLSLPSLPDGLVIDWVKLPELPLLQRSLPKGDAISISVAAASIIAKVYRDNLMHE
YDQRDPRYGWAAHKGYGTAQHQRALAAHGPSGLHRRSFKPLAAFVD

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family

Homologues:

Organism=Escherichia coli, GI1786380, Length=186, Percent_Identity=44.6236559139785, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNH2_HERA2 (A9B6H3)

Other databases:

- EMBL:   CP000875
- RefSeq:   YP_001543004.1
- ProteinModelPortal:   A9B6H3
- SMR:   A9B6H3
- GeneID:   5732119
- GenomeReviews:   CP000875_GR
- KEGG:   hau:Haur_0224
- HOGENOM:   HBG584843
- OMA:   RLGPTPI
- BioCyc:   HAUR316274:HAUR_0224-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00052_B
- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337
- PANTHER:   PTHR10954

Pfam domain/function: PF01351 RNase_HII; SSF53098 RNaseH_fold

EC number: =3.1.26.4

Molecular weight: Translated: 22256; Mature: 22125

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIGIHEEQQLWRNGARIVAGVDEVGRGCWAGPVVAAAVSFPTHLLNDPVALAGINDSKT
CCCCCCHHHHHHHCCCEEEECHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH
LSAEARQAMAQQIRHLASGIGLGVVSAHLIDLFGIAEATKWAMMHAVLSLPSLPDGLVID
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
WVKLPELPLLQRSLPKGDAISISVAAASIIAKVYRDNLMHEYDQRDPRYGWAAHKGYGTA
HECCCCCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCH
QHQRALAAHGPSGLHRRSFKPLAAFVD
HHHHHHHHCCCCCCHHHCCCHHHHHCC
>Mature Secondary Structure 
TIGIHEEQQLWRNGARIVAGVDEVGRGCWAGPVVAAAVSFPTHLLNDPVALAGINDSKT
CCCCCHHHHHHHCCCEEEECHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH
LSAEARQAMAQQIRHLASGIGLGVVSAHLIDLFGIAEATKWAMMHAVLSLPSLPDGLVID
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
WVKLPELPLLQRSLPKGDAISISVAAASIIAKVYRDNLMHEYDQRDPRYGWAAHKGYGTA
HECCCCCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCH
QHQRALAAHGPSGLHRRSFKPLAAFVD
HHHHHHHHCCCCCCHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA