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The map label for this gene is algU [H]

Identifier: 159896696

GI number: 159896696

Start: 196410

End: 197075

Strand: Direct

Name: algU [H]

Synonym: Haur_0163

Alternate gene names: 159896696

Gene position: 196410-197075 (Clockwise)

Preceding gene: 159896695

Following gene: 159896697

Centisome position: 3.09

GC content: 50.15

Gene sequence:

>666_bases
GTGGCCGAACCAACTACAGAAATTTTATATCGCGCTCAACGCAATGACCCCGAAGCAATGGGAGCATTGATTGTTAGCCA
ACAACATTATATTTACAACATCGCCATGAGCGTGATGCGCCAGCCCGAAGATGCCGCTGACCTAACCCAAGATGCTTGTA
TCAAGCTGTTGCGGGTGATTGGCCAGTATAATGGCGAAAGTCGTTTTACCACTTGGCTCTATCGTTTGGTGATCAACCTT
GGGCGTGACGAGCTGCGCAAACGTGGCCGCCGTGCTCCAGAGATGCCACCAATGACCGATGACGATGGTGAAACCGTTGA
TCCATTATCGAGCATTGCCGATGATAACCGTTGGGCCGACCCGCAAGAAGTGGCAACCAACCACGAGTTGCGGGCCGAGG
TAACCCAAGCCTTGGATAAACTGGAAGATCATTATCGTTTAGCATTAACGCTCTACTATTTTGACGATTTGCGGTACAAT
GATATTGCTGAAATTTTGGAAGTACCGCTGAATACGGTCAAAAGCTATATTCGCCGTGGTAAAGAGCGGCTTGCCTTGCT
CTTAGGTGCCAATCAATCGGAAGCAATTTTGCCCGCCAAACGTGAACCTGTTACCGATGAACGGCCAAACCGCGGTCGCT
TTGCATTTGCCCTAGGCTGGCGCTGA

Upstream 100 bases:

>100_bases
GGCATAATCGTGATTAATCGCTGCGAATTGCTGCAACTATTTTTTGCGGGTCAGCGTCTCAAGCAACAGAAGCCACGCTG
ATGGCAAGGAGTTGTATACT

Downstream 100 bases:

>100_bases
GGTGTGTCATGAAGCGTTGTGAACATCGTACCAACTATGATCTGCGTGAAGAAGCGCTTGATCCACAACTTACAGACCAT
CTTGCTGAATGTGAAAGCTG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MAEPTTEILYRAQRNDPEAMGALIVSQQHYIYNIAMSVMRQPEDAADLTQDACIKLLRVIGQYNGESRFTTWLYRLVINL
GRDELRKRGRRAPEMPPMTDDDGETVDPLSSIADDNRWADPQEVATNHELRAEVTQALDKLEDHYRLALTLYYFDDLRYN
DIAEILEVPLNTVKSYIRRGKERLALLLGANQSEAILPAKREPVTDERPNRGRFAFALGWR

Sequences:

>Translated_221_residues
MAEPTTEILYRAQRNDPEAMGALIVSQQHYIYNIAMSVMRQPEDAADLTQDACIKLLRVIGQYNGESRFTTWLYRLVINL
GRDELRKRGRRAPEMPPMTDDDGETVDPLSSIADDNRWADPQEVATNHELRAEVTQALDKLEDHYRLALTLYYFDDLRYN
DIAEILEVPLNTVKSYIRRGKERLALLLGANQSEAILPAKREPVTDERPNRGRFAFALGWR
>Mature_220_residues
AEPTTEILYRAQRNDPEAMGALIVSQQHYIYNIAMSVMRQPEDAADLTQDACIKLLRVIGQYNGESRFTTWLYRLVINLG
RDELRKRGRRAPEMPPMTDDDGETVDPLSSIADDNRWADPQEVATNHELRAEVTQALDKLEDHYRLALTLYYFDDLRYND
IAEILEVPLNTVKSYIRRGKERLALLLGANQSEAILPAKREPVTDERPNRGRFAFALGWR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=186, Percent_Identity=32.258064516129, Blast_Score=100, Evalue=6e-23,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 25451; Mature: 25320

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPTTEILYRAQRNDPEAMGALIVSQQHYIYNIAMSVMRQPEDAADLTQDACIKLLRVI
CCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
GQYNGESRFTTWLYRLVINLGRDELRKRGRRAPEMPPMTDDDGETVDPLSSIADDNRWAD
HCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC
PQEVATNHELRAEVTQALDKLEDHYRLALTLYYFDDLRYNDIAEILEVPLNTVKSYIRRG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHH
KERLALLLGANQSEAILPAKREPVTDERPNRGRFAFALGWR
HHHEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure 
AEPTTEILYRAQRNDPEAMGALIVSQQHYIYNIAMSVMRQPEDAADLTQDACIKLLRVI
CCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
GQYNGESRFTTWLYRLVINLGRDELRKRGRRAPEMPPMTDDDGETVDPLSSIADDNRWAD
HCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC
PQEVATNHELRAEVTQALDKLEDHYRLALTLYYFDDLRYNDIAEILEVPLNTVKSYIRRG
HHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHH
KERLALLLGANQSEAILPAKREPVTDERPNRGRFAFALGWR
HHHEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]