Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159896560

Identifier: 159896560

GI number: 159896560

Start: 33570

End: 34424

Strand: Direct

Name: 159896560

Synonym: Haur_0027

Alternate gene names: NA

Gene position: 33570-34424 (Clockwise)

Preceding gene: 159896559

Following gene: 159896563

Centisome position: 0.53

GC content: 52.4

Gene sequence:

>855_bases
ATGAGCCACATTTTGCCCGCTTGGCACCGCGAATTGCGGCGCAACCAGACGCTTAATCAATGGGGCTTTCGTTGGCATTC
ACAACGCCGATTAAGCCGCACGCCAGCCCGTGCCGATGGCTTGATCAGCTTGGGTTCTTGCCCTTCAGTCACCACCCGCC
ATACCCGAGCCAGTATTTTGCTTGATCCGAGCCAACCACAGCAGCTTTGGCTGGATTTTTGTGGCGAGCCAGACGCACCA
CGCTTAAGCTGTGAACCAAGTTTCGACGCGCTCAGTCTGGTCTATCAACGCTATTTTCAGCGCTTCAATGGGCGGCCTCA
ATCCCGCGGAATCAATCTGTTGCGTCAGGTGGTGCAATTGCGCTCCCAGCCAGCCCCGTTTGATCTGGCAACATTTTTGG
GCGATGGCTATCATCAATTTCATCTGTTTTTGGGCTTGATCGATGATCAAACGATTATCGAGTTGGAAAATTCAATGGTG
TTTAACCCATGGCTGAGCTTGCAGGCCTTGGCCTTGGATTCAGGCAGTGGTTGCGGCTATTCGCAATACCGCACCGCCTT
CTCTGGCTCGATTTTGACCATGGAATTTAATCGTCAATTCGTAACCAAAGATGCAGCCTGTATTGCGCGAATCGCTTATC
ACCCAGTACCTGTGGCCGAGCAAGCTAGCGTGCAACGCTGGCAAATGCAAAACCCCGCCAATGTTGTAGCAACCCTGCCG
CAAGCTGTGCCATTTGATGTGTTGGGGTTGTATCATCATCTCGATTGGCAATGGTGGCAAACTGCCGAACATGCGCAATC
GATGGCTGCTGAAGGCGATAAGCATGCGGCGATTGTGGTGCGTTTGTTGACTTAA

Upstream 100 bases:

>100_bases
TGGCTCGCGAAGGCCAATAATTGGTTTGTAAAGGTCAATCCCTGACACACCCAACGACTATCCTACAAGGGTAGTCGTTT
TTTCGTGCAAGGAGCCTGCT

Downstream 100 bases:

>100_bases
ACCATTCAGCGGTCGGGAAGCAACTTCCCGACCGCTGTTTCGATACAAGTTTGGTTAGGCTGAAAGTGGCTCAACTGGCT
TGCTACTGGTAATTTGCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSHILPAWHRELRRNQTLNQWGFRWHSQRRLSRTPARADGLISLGSCPSVTTRHTRASILLDPSQPQQLWLDFCGEPDAP
RLSCEPSFDALSLVYQRYFQRFNGRPQSRGINLLRQVVQLRSQPAPFDLATFLGDGYHQFHLFLGLIDDQTIIELENSMV
FNPWLSLQALALDSGSGCGYSQYRTAFSGSILTMEFNRQFVTKDAACIARIAYHPVPVAEQASVQRWQMQNPANVVATLP
QAVPFDVLGLYHHLDWQWWQTAEHAQSMAAEGDKHAAIVVRLLT

Sequences:

>Translated_284_residues
MSHILPAWHRELRRNQTLNQWGFRWHSQRRLSRTPARADGLISLGSCPSVTTRHTRASILLDPSQPQQLWLDFCGEPDAP
RLSCEPSFDALSLVYQRYFQRFNGRPQSRGINLLRQVVQLRSQPAPFDLATFLGDGYHQFHLFLGLIDDQTIIELENSMV
FNPWLSLQALALDSGSGCGYSQYRTAFSGSILTMEFNRQFVTKDAACIARIAYHPVPVAEQASVQRWQMQNPANVVATLP
QAVPFDVLGLYHHLDWQWWQTAEHAQSMAAEGDKHAAIVVRLLT
>Mature_283_residues
SHILPAWHRELRRNQTLNQWGFRWHSQRRLSRTPARADGLISLGSCPSVTTRHTRASILLDPSQPQQLWLDFCGEPDAPR
LSCEPSFDALSLVYQRYFQRFNGRPQSRGINLLRQVVQLRSQPAPFDLATFLGDGYHQFHLFLGLIDDQTIIELENSMVF
NPWLSLQALALDSGSGCGYSQYRTAFSGSILTMEFNRQFVTKDAACIARIAYHPVPVAEQASVQRWQMQNPANVVATLPQ
AVPFDVLGLYHHLDWQWWQTAEHAQSMAAEGDKHAAIVVRLLT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32324; Mature: 32193

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHILPAWHRELRRNQTLNQWGFRWHSQRRLSRTPARADGLISLGSCPSVTTRHTRASIL
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEE
LDPSQPQQLWLDFCGEPDAPRLSCEPSFDALSLVYQRYFQRFNGRPQSRGINLLRQVVQL
ECCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RSQPAPFDLATFLGDGYHQFHLFLGLIDDQTIIELENSMVFNPWLSLQALALDSGSGCGY
HCCCCCCHHHHHHCCCHHEEEHEEEECCCCEEEEECCCEEECCCCCEEEEEEECCCCCCH
SQYRTAFSGSILTMEFNRQFVTKDAACIARIAYHPVPVAEQASVQRWQMQNPANVVATLP
HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCC
QAVPFDVLGLYHHLDWQWWQTAEHAQSMAAEGDKHAAIVVRLLT
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECC
>Mature Secondary Structure 
SHILPAWHRELRRNQTLNQWGFRWHSQRRLSRTPARADGLISLGSCPSVTTRHTRASIL
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEE
LDPSQPQQLWLDFCGEPDAPRLSCEPSFDALSLVYQRYFQRFNGRPQSRGINLLRQVVQL
ECCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RSQPAPFDLATFLGDGYHQFHLFLGLIDDQTIIELENSMVFNPWLSLQALALDSGSGCGY
HCCCCCCHHHHHHCCCHHEEEHEEEECCCCEEEEECCCEEECCCCCEEEEEEECCCCCCH
SQYRTAFSGSILTMEFNRQFVTKDAACIARIAYHPVPVAEQASVQRWQMQNPANVVATLP
HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCC
QAVPFDVLGLYHHLDWQWWQTAEHAQSMAAEGDKHAAIVVRLLT
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA