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The map label for this gene is sarH2

Identifier: 15928078

GI number: 15928078

Start: 2564802

End: 2565545

Strand: Direct

Name: sarH2

Synonym: SA2287

Alternate gene names: 15928078

Gene position: 2564802-2565545 (Clockwise)

Preceding gene: 15928072

Following gene: 15928092

Centisome position: 91.12

GC content: 24.87

Gene sequence:

>744_bases
GTGGACTATCAAACTTTCGAAAAGGTCAATAAATTCATAAATGTAGAAGCGTACATATTTTTTCTCACTCAAGAGTTAAA
GCAACAATATAAATTATCATTAAAAGAATTGTTGATATTAGCATATTTTTATTACAAAAATGAACACAGTATTTCACTAA
AAGAAATCATTGGTGACATACTTTACAAACAATCTGATGTTGTAAAGAACATTAAGTCACTATCTAAAAAAGGATTTATA
AATAAGTCTAGAAACGAAGCAGATGAACGCCGTATTTTTGTTTCAGTTACTCCAATACAACGTAAAAAGATTGCTTGTGT
TATTAATGAGTTAGATAAAATAATTAAAGGATTTAATAAGGAAAGAGACTACATAAAATATCAATGGGCTCCAAAATATA
GCAAAGAATTTTTTATACTTTTTATGAACATTATGTACTCAAAAGATTTTTTAAAATATCGATTTAATTTAACATTTCTT
GATTTATCTATCTTATATGTAATATCATCTCGAAAAAATGAGATACTAAATTTAAAAGATTTGTTTGAAAGTATTAGATT
TATGTATCCTCAAATTGTTAGGTCAGTTAATAGATTAAATAATAAAGGTATGCTAATCAAAGAACGATCCCTTGCAGATG
AAAGGATTGTGTTAATCAAAATAAATAAAATACAATATAACACTATTAAAAGCATATTCACAGATACTTCCAAGATTCTC
AAACCAAGAAAATTTTTCTTTTAA

Upstream 100 bases:

>100_bases
AAAAATATTTAGGTTAACATGTCTTCAAAAGAGATTGCTTTTATATTACTTTAAATAATATAAAGTATTGGGACATCAGA
AAATAGTAGGAGAATGTAAG

Downstream 100 bases:

>100_bases
ATTTAAACAGATTTACCTCTTGATAAAATAAATAAGCAATCATAATACTTCTCAATTTAGTATAAATAAAAATACATAAT
TAACTTTCTTTTGTTTTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: Staphylococcal accessory regulator U

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MDYQTFEKVNKFINVEAYIFFLTQELKQQYKLSLKELLILAYFYYKNEHSISLKEIIGDILYKQSDVVKNIKSLSKKGFI
NKSRNEADERRIFVSVTPIQRKKIACVINELDKIIKGFNKERDYIKYQWAPKYSKEFFILFMNIMYSKDFLKYRFNLTFL
DLSILYVISSRKNEILNLKDLFESIRFMYPQIVRSVNRLNNKGMLIKERSLADERIVLIKINKIQYNTIKSIFTDTSKIL
KPRKFFF

Sequences:

>Translated_247_residues
MDYQTFEKVNKFINVEAYIFFLTQELKQQYKLSLKELLILAYFYYKNEHSISLKEIIGDILYKQSDVVKNIKSLSKKGFI
NKSRNEADERRIFVSVTPIQRKKIACVINELDKIIKGFNKERDYIKYQWAPKYSKEFFILFMNIMYSKDFLKYRFNLTFL
DLSILYVISSRKNEILNLKDLFESIRFMYPQIVRSVNRLNNKGMLIKERSLADERIVLIKINKIQYNTIKSIFTDTSKIL
KPRKFFF
>Mature_247_residues
MDYQTFEKVNKFINVEAYIFFLTQELKQQYKLSLKELLILAYFYYKNEHSISLKEIIGDILYKQSDVVKNIKSLSKKGFI
NKSRNEADERRIFVSVTPIQRKKIACVINELDKIIKGFNKERDYIKYQWAPKYSKEFFILFMNIMYSKDFLKYRFNLTFL
DLSILYVISSRKNEILNLKDLFESIRFMYPQIVRSVNRLNNKGMLIKERSLADERIVLIKINKIQYNTIKSIFTDTSKIL
KPRKFFF

Specific function: Positive regulator of RNAII and RNAIII in a cell density-dependent manner. It can contribute to the expression of virulence genes controlled by agr. May also regulate target genes via an agr-independent pathway

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sarA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SARU_STAA8 (Q2G1T7)

Other databases:

- EMBL:   CP000253
- RefSeq:   YP_501259.1
- ProteinModelPortal:   Q2G1T7
- SMR:   Q2G1T7
- STRING:   Q2G1T7
- EnsemblBacteria:   EBSTAT00000030350
- GeneID:   3921454
- GenomeReviews:   CP000253_GR
- KEGG:   sao:SAOUHSC_02800
- eggNOG:   COG1846
- GeneTree:   EBGT00050000023834
- HOGENOM:   HBG693007
- ProtClustDB:   CLSK884405
- BioCyc:   SAUR93061:SAOUHSC_02800-MONOMER
- GO:   GO:0005737
- GO:   GO:0009405
- GO:   GO:0006350
- InterPro:   IPR010166
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- TIGRFAMs:   TIGR01889

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29794; Mature: 29794

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYQTFEKVNKFINVEAYIFFLTQELKQQYKLSLKELLILAYFYYKNEHSISLKEIIGDI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHH
LYKQSDVVKNIKSLSKKGFINKSRNEADERRIFVSVTPIQRKKIACVINELDKIIKGFNK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
ERDYIKYQWAPKYSKEFFILFMNIMYSKDFLKYRFNLTFLDLSILYVISSRKNEILNLKD
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHCCCCCEECHHH
LFESIRFMYPQIVRSVNRLNNKGMLIKERSLADERIVLIKINKIQYNTIKSIFTDTSKIL
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCEEHHHHHHHHHCHHHHC
KPRKFFF
CCHHCCC
>Mature Secondary Structure
MDYQTFEKVNKFINVEAYIFFLTQELKQQYKLSLKELLILAYFYYKNEHSISLKEIIGDI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHH
LYKQSDVVKNIKSLSKKGFINKSRNEADERRIFVSVTPIQRKKIACVINELDKIIKGFNK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
ERDYIKYQWAPKYSKEFFILFMNIMYSKDFLKYRFNLTFLDLSILYVISSRKNEILNLKD
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHCCCCCEECHHH
LFESIRFMYPQIVRSVNRLNNKGMLIKERSLADERIVLIKINKIQYNTIKSIFTDTSKIL
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCEEHHHHHHHHHCHHHHC
KPRKFFF
CCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12496184