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The map label for this gene is ygcB [C]

Identifier: 15922983

GI number: 15922983

Start: 2680958

End: 2682463

Strand: Direct

Name: ygcB [C]

Synonym: ST2639

Alternate gene names: 15922983

Gene position: 2680958-2682463 (Clockwise)

Preceding gene: 15922982

Following gene: 15922984

Centisome position: 99.49

GC content: 38.25

Gene sequence:

>1506_bases
GTGAGGCTTATGAGGTGGGAGGAGAATATGTTGTCTTCGGCTAAGAGTATAACTGATATTTATGAGGAGTTCATAAAGGA
TAACAGACTACAAGACAGATTAGCTATTAGACAAACTGTAGAGGAATTAGAAAAAGGACACAATGTTATCCTTAAGGCTC
CTACTGGATACGGTAAGACAACGTTAACAAAAGTATTGGCTAATGCTGTAGACCTAGGTTATTTTGCTAGGGTAATACAC
GTTCTCCCATTAAGGGCAATTGTACAAGACCTCTATGAGAAACTAAAATCCGATAGTGAAAAGGGAGTTATTAGGACTAA
AAGTATTGCAGCCCAAGATATGGACTTCTCAGATTCTCCCTTTTTCATGCAGAGAGTGACTGTGACCACTCTAGATACCT
TTATCCTTAACCTATTTAAACTTCCCGCGGTTGAGATGGGTAAAGTATTTCAAAACTTTGGAGCCCATTATGAATTACCA
AGGGGTATGATATATTCATCATTAGTTATATTTGATGAGTTCCACCTTCTAGGAGAGGAGGGTAGACCTTTAACTGCTGG
ATTATCTGCTGTAAAGTCACTTACAGATGCAGGTGTTCCAGTAATAATCATGTCTGCCACTATTGACAAAGGGCTAGAAT
CACTGATAATGAAGTACGGTAAAGATTTCGTTACTGTGGAAGCCAAAGACTTCAGTATTGAAAGAAAGATTACAGTTAAG
AAGATAAGAGAAGAAGAGGTCTTAAGTGACGTTTTAAAAGAATATAGTGAAGGAAAGAGAGTATTAGTAGTGTTTAATAC
TAGGGTAGGGGCTATTAATTTTTATAAGGCTCTTAAGGATAAGGGACTGAACCCAGTACTAATCCACAGTAAGTTCAATA
GGGAAGATAGAAGGGTCTTAGTTCAGAAGGTATTAAAGGAAAGGCTTGTTGTCTCTACTCAAGTTATTGAGGCTGGAATA
GATACAAGTTTTGACGTATTAATTACTGAAGCAGCACCAGCATCAAACCTAATACAGAGGGCTGGAAGAGTTGCAAGATA
TGGAGGTTATGGTGAGGTCCATGTGTTTCCGTTCAGTGGAAAGGTTTATGATAAGGAAGAGGTACAGGAGGTTTGGGAAT
CCTTAGACAGAGGTTTGCCAGAGCTTAAGGAGAAAGAGTATCATGTCGATAACATACTTCTCAGTGACTTAACTACTATA
GACCATTCAGTATTTGCTGATTCAATTACAGCTAAGAACCTTTATACCTCTGTATGTAATATAGTGAGGGAAACATCTAT
TATAATGGGCTTTCCTAGGGGAGAGTATAATTCTGAGAAGGCAATTCCCCTTACAGAAAAAGAAGCAATGGAGGCTCTGA
GAAAGAACGGAGCTGTAAAAGATGGTAAGGAGGTTACAGATTATAAACCCTCTACAAATGTTTGCCTACAATTAGATCTC
CTAATGAAAGGAATAGACGGTGTAATAATAGCTGGTTATGATAAGGAGATCGGAGGGATAATATGA

Upstream 100 bases:

>100_bases
GAAAACGGTTTCATTTGGGGAAGTGCAGGAAACGTAGTGACATATGCACTCCCAGTTACGGGATATCCGTTAAAGAGCAA
GGAGGTTGAAGTAGAGGCTA

Downstream 100 bases:

>100_bases
AGAAACCATGTGCATTTACAAATCAGCCTTTATTAGACCACTCTAAAGGTTCACTTAACTCTATGAAAAAGATCCTTTCC
GATTCCTATGTATTAACAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MRLMRWEENMLSSAKSITDIYEEFIKDNRLQDRLAIRQTVEELEKGHNVILKAPTGYGKTTLTKVLANAVDLGYFARVIH
VLPLRAIVQDLYEKLKSDSEKGVIRTKSIAAQDMDFSDSPFFMQRVTVTTLDTFILNLFKLPAVEMGKVFQNFGAHYELP
RGMIYSSLVIFDEFHLLGEEGRPLTAGLSAVKSLTDAGVPVIIMSATIDKGLESLIMKYGKDFVTVEAKDFSIERKITVK
KIREEEVLSDVLKEYSEGKRVLVVFNTRVGAINFYKALKDKGLNPVLIHSKFNREDRRVLVQKVLKERLVVSTQVIEAGI
DTSFDVLITEAAPASNLIQRAGRVARYGGYGEVHVFPFSGKVYDKEEVQEVWESLDRGLPELKEKEYHVDNILLSDLTTI
DHSVFADSITAKNLYTSVCNIVRETSIIMGFPRGEYNSEKAIPLTEKEAMEALRKNGAVKDGKEVTDYKPSTNVCLQLDL
LMKGIDGVIIAGYDKEIGGII

Sequences:

>Translated_501_residues
MRLMRWEENMLSSAKSITDIYEEFIKDNRLQDRLAIRQTVEELEKGHNVILKAPTGYGKTTLTKVLANAVDLGYFARVIH
VLPLRAIVQDLYEKLKSDSEKGVIRTKSIAAQDMDFSDSPFFMQRVTVTTLDTFILNLFKLPAVEMGKVFQNFGAHYELP
RGMIYSSLVIFDEFHLLGEEGRPLTAGLSAVKSLTDAGVPVIIMSATIDKGLESLIMKYGKDFVTVEAKDFSIERKITVK
KIREEEVLSDVLKEYSEGKRVLVVFNTRVGAINFYKALKDKGLNPVLIHSKFNREDRRVLVQKVLKERLVVSTQVIEAGI
DTSFDVLITEAAPASNLIQRAGRVARYGGYGEVHVFPFSGKVYDKEEVQEVWESLDRGLPELKEKEYHVDNILLSDLTTI
DHSVFADSITAKNLYTSVCNIVRETSIIMGFPRGEYNSEKAIPLTEKEAMEALRKNGAVKDGKEVTDYKPSTNVCLQLDL
LMKGIDGVIIAGYDKEIGGII
>Mature_501_residues
MRLMRWEENMLSSAKSITDIYEEFIKDNRLQDRLAIRQTVEELEKGHNVILKAPTGYGKTTLTKVLANAVDLGYFARVIH
VLPLRAIVQDLYEKLKSDSEKGVIRTKSIAAQDMDFSDSPFFMQRVTVTTLDTFILNLFKLPAVEMGKVFQNFGAHYELP
RGMIYSSLVIFDEFHLLGEEGRPLTAGLSAVKSLTDAGVPVIIMSATIDKGLESLIMKYGKDFVTVEAKDFSIERKITVK
KIREEEVLSDVLKEYSEGKRVLVVFNTRVGAINFYKALKDKGLNPVLIHSKFNREDRRVLVQKVLKERLVVSTQVIEAGI
DTSFDVLITEAAPASNLIQRAGRVARYGGYGEVHVFPFSGKVYDKEEVQEVWESLDRGLPELKEKEYHVDNILLSDLTTI
DHSVFADSITAKNLYTSVCNIVRETSIIMGFPRGEYNSEKAIPLTEKEAMEALRKNGAVKDGKEVTDYKPSTNVCLQLDL
LMKGIDGVIIAGYDKEIGGII

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 56296; Mature: 56296

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLMRWEENMLSSAKSITDIYEEFIKDNRLQDRLAIRQTVEELEKGHNVILKAPTGYGKT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHH
TLTKVLANAVDLGYFARVIHVLPLRAIVQDLYEKLKSDSEKGVIRTKSIAAQDMDFSDSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCC
FFMQRVTVTTLDTFILNLFKLPAVEMGKVFQNFGAHYELPRGMIYSSLVIFDEFHLLGEE
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
GRPLTAGLSAVKSLTDAGVPVIIMSATIDKGLESLIMKYGKDFVTVEAKDFSIERKITVK
CCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCCEEHHHHHH
KIREEEVLSDVLKEYSEGKRVLVVFNTRVGAINFYKALKDKGLNPVLIHSKFNREDRRVL
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
VQKVLKERLVVSTQVIEAGIDTSFDVLITEAAPASNLIQRAGRVARYGGYGEVHVFPFSG
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEEECCC
KVYDKEEVQEVWESLDRGLPELKEKEYHVDNILLSDLTTIDHSVFADSITAKNLYTSVCN
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVRETSIIMGFPRGEYNSEKAIPLTEKEAMEALRKNGAVKDGKEVTDYKPSTNVCLQLDL
HHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEHHH
LMKGIDGVIIAGYDKEIGGII
HHCCCCCEEEECCCHHCCCCC
>Mature Secondary Structure
MRLMRWEENMLSSAKSITDIYEEFIKDNRLQDRLAIRQTVEELEKGHNVILKAPTGYGKT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHH
TLTKVLANAVDLGYFARVIHVLPLRAIVQDLYEKLKSDSEKGVIRTKSIAAQDMDFSDSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCC
FFMQRVTVTTLDTFILNLFKLPAVEMGKVFQNFGAHYELPRGMIYSSLVIFDEFHLLGEE
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
GRPLTAGLSAVKSLTDAGVPVIIMSATIDKGLESLIMKYGKDFVTVEAKDFSIERKITVK
CCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCCEEHHHHHH
KIREEEVLSDVLKEYSEGKRVLVVFNTRVGAINFYKALKDKGLNPVLIHSKFNREDRRVL
HHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
VQKVLKERLVVSTQVIEAGIDTSFDVLITEAAPASNLIQRAGRVARYGGYGEVHVFPFSG
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEEECCC
KVYDKEEVQEVWESLDRGLPELKEKEYHVDNILLSDLTTIDHSVFADSITAKNLYTSVCN
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVRETSIIMGFPRGEYNSEKAIPLTEKEAMEALRKNGAVKDGKEVTDYKPSTNVCLQLDL
HHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEHHH
LMKGIDGVIIAGYDKEIGGII
HHCCCCCEEEECCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]