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The map label for this gene is csd [H]

Identifier: 15922467

GI number: 15922467

Start: 2141927

End: 2143042

Strand: Direct

Name: csd [H]

Synonym: ST2140

Alternate gene names: 15922467

Gene position: 2141927-2143042 (Clockwise)

Preceding gene: 15922466

Following gene: 15922470

Centisome position: 79.49

GC content: 30.11

Gene sequence:

>1116_bases
ATGAAATTTCATGAAGACTTTAGAAATTTAGTACCAGTGACAAAAGAATACGTTTATTTAAATCATGCTGCAATATCTCC
TATACCTTTACCTATATTATATGAAAGCTTGAGATATTTGTTAGATATTTCAAGATACGGTTCCTTACCTGTAAATGATG
AGGAAAATGATGACTTTTATCACCTTAGAGAAAAGGTTGGGAAATTAATAAATGCAGAACCAGATACAATATCTTTTATA
CCAAATACTAGTTTTGGAATAAATATTATAGCTCACGGTTTAGATCTTAATGAAGGTGACGAAATAGTTACTGATAGTCT
AGAATTTCCTGCAGTTACGTATCCATTTTTTAAACTTAAAAAGAAAAATATAAAGATAGTAATAGTAAAACCCAGACTAG
AAAATTTTGAAGATGATTTACTTTCTAGTATAAGTAAAAAAACTAGATTAATAGCTATAAGTCATGTTAGTTTTAATACT
GGAGTAAAATTAGACATAAAGAAAATTTCTAAAGAAGCTAAGTCCGTAGGTGCATACACATTAGTTGATATTATTCAAAG
CGCAGGAGCAACAGAAGTAAACGTAAAAGATTTTGACATAGATTTTGCAGTTGCCGGTGGATATAAATGGTTAATGAGTC
CTCAAGGTTCTGGGTTTATGTATGTAAAAAAGGGTTTGATAGAAGATCCGCCATTTTATGGATGGAGATCATCTTCTAAT
TATCTTGATTTTAACTCGGAGAATTTTATGTTAGAAAAAGGACCTAGAAGATTTGAGATTGGTACAATAGATGTAGCAGC
TAATATAGCCTTAGCGAAGTCATGTGAAATCGTATCACAACATAAGGATGAAATATACCCAAGAATTCAAAATCTAACGG
ATTTTGTAATAAAGTACGCAGAAGAGCAAGGATTAGAAGTTATAACCCCGAAAAATAAAAAAGCTGGAATAGTTATAATA
AAAACAAATAATCCAAAAGAATTATCAAGAAGATTACTAGAGAAGAAAATTGTAGTATCACCTAGAGGTAATGGGGTAAG
AATTTCTACTCATTTCTATAATCTAGAGGACGAAGTGAAAATTGCCATAGATGAAATTAGAAAACTAGCATTTTAA

Upstream 100 bases:

>100_bases
AGTGGCAAGACTGTAAGAAGAATTTTAAGAGATATACTTTTAAATAAGGAAATTGATGCTTCAATACTTGAAGACCCAGA
AGTCGTAAAGGAGATTAAGG

Downstream 100 bases:

>100_bases
GTTAATATATAATTCTTCTAAATCTTCCATAATCCTAACTAGCATTCCATAAAGTATTATATCATCTATCTTATCAATGT
TTTTAGCTATATAAATTATA

Product: isopenicillin N epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MKFHEDFRNLVPVTKEYVYLNHAAISPIPLPILYESLRYLLDISRYGSLPVNDEENDDFYHLREKVGKLINAEPDTISFI
PNTSFGINIIAHGLDLNEGDEIVTDSLEFPAVTYPFFKLKKKNIKIVIVKPRLENFEDDLLSSISKKTRLIAISHVSFNT
GVKLDIKKISKEAKSVGAYTLVDIIQSAGATEVNVKDFDIDFAVAGGYKWLMSPQGSGFMYVKKGLIEDPPFYGWRSSSN
YLDFNSENFMLEKGPRRFEIGTIDVAANIALAKSCEIVSQHKDEIYPRIQNLTDFVIKYAEEQGLEVITPKNKKAGIVII
KTNNPKELSRRLLEKKIVVSPRGNGVRISTHFYNLEDEVKIAIDEIRKLAF

Sequences:

>Translated_371_residues
MKFHEDFRNLVPVTKEYVYLNHAAISPIPLPILYESLRYLLDISRYGSLPVNDEENDDFYHLREKVGKLINAEPDTISFI
PNTSFGINIIAHGLDLNEGDEIVTDSLEFPAVTYPFFKLKKKNIKIVIVKPRLENFEDDLLSSISKKTRLIAISHVSFNT
GVKLDIKKISKEAKSVGAYTLVDIIQSAGATEVNVKDFDIDFAVAGGYKWLMSPQGSGFMYVKKGLIEDPPFYGWRSSSN
YLDFNSENFMLEKGPRRFEIGTIDVAANIALAKSCEIVSQHKDEIYPRIQNLTDFVIKYAEEQGLEVITPKNKKAGIVII
KTNNPKELSRRLLEKKIVVSPRGNGVRISTHFYNLEDEVKIAIDEIRKLAF
>Mature_371_residues
MKFHEDFRNLVPVTKEYVYLNHAAISPIPLPILYESLRYLLDISRYGSLPVNDEENDDFYHLREKVGKLINAEPDTISFI
PNTSFGINIIAHGLDLNEGDEIVTDSLEFPAVTYPFFKLKKKNIKIVIVKPRLENFEDDLLSSISKKTRLIAISHVSFNT
GVKLDIKKISKEAKSVGAYTLVDIIQSAGATEVNVKDFDIDFAVAGGYKWLMSPQGSGFMYVKKGLIEDPPFYGWRSSSN
YLDFNSENFMLEKGPRRFEIGTIDVAANIALAKSCEIVSQHKDEIYPRIQNLTDFVIKYAEEQGLEVITPKNKKAGIVII
KTNNPKELSRRLLEKKIVVSPRGNGVRISTHFYNLEDEVKIAIDEIRKLAF

Specific function: Cysteine Desulfurases Mobilize The Sulfur From L- Cysteine To Yield L-Alanine, An Essential Step In Sulfur Metabolism For Biosynthesis Of A Variety Of Sulfur-Containing Biomolecules. Component Of The Suf Operon, Which Is Activated And Required Under Speci

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=309, Percent_Identity=27.831715210356, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789175, Length=227, Percent_Identity=30.8370044052863, Blast_Score=86, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 42086; Mature: 42086

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFHEDFRNLVPVTKEYVYLNHAAISPIPLPILYESLRYLLDISRYGSLPVNDEENDDFY
CCHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
HLREKVGKLINAEPDTISFIPNTSFGINIIAHGLDLNEGDEIVTDSLEFPAVTYPFFKLK
HHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCCCCCCCEEECCCCCCEEECCHHEEE
KKNIKIVIVKPRLENFEDDLLSSISKKTRLIAISHVSFNTGVKLDIKKISKEAKSVGAYT
CCCEEEEEECCCCCCHHHHHHHHHHHCEEEEEEEEEECCCCCEEEHHHHHHHHHHCCHHH
LVDIIQSAGATEVNVKDFDIDFAVAGGYKWLMSPQGSGFMYVKKGLIEDPPFYGWRSSSN
HHHHHHCCCCCEEEEEEEEEEEEEECCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCC
YLDFNSENFMLEKGPRRFEIGTIDVAANIALAKSCEIVSQHKDEIYPRIQNLTDFVIKYA
EEEECCCCEEEECCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEQGLEVITPKNKKAGIVIIKTNNPKELSRRLLEKKIVVSPRGNGVRISTHFYNLEDEVK
HHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHEEEECCCCCCEEEEEEEECCCCHHH
IAIDEIRKLAF
HHHHHHHHHCC
>Mature Secondary Structure
MKFHEDFRNLVPVTKEYVYLNHAAISPIPLPILYESLRYLLDISRYGSLPVNDEENDDFY
CCHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
HLREKVGKLINAEPDTISFIPNTSFGINIIAHGLDLNEGDEIVTDSLEFPAVTYPFFKLK
HHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCCCCCCCEEECCCCCCEEECCHHEEE
KKNIKIVIVKPRLENFEDDLLSSISKKTRLIAISHVSFNTGVKLDIKKISKEAKSVGAYT
CCCEEEEEECCCCCCHHHHHHHHHHHCEEEEEEEEEECCCCCEEEHHHHHHHHHHCCHHH
LVDIIQSAGATEVNVKDFDIDFAVAGGYKWLMSPQGSGFMYVKKGLIEDPPFYGWRSSSN
HHHHHHCCCCCEEEEEEEEEEEEEECCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCC
YLDFNSENFMLEKGPRRFEIGTIDVAANIALAKSCEIVSQHKDEIYPRIQNLTDFVIKYA
EEEECCCCEEEECCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEQGLEVITPKNKKAGIVIIKTNNPKELSRRLLEKKIVVSPRGNGVRISTHFYNLEDEVK
HHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHEEEECCCCCCEEEEEEEECCCCHHH
IAIDEIRKLAF
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]