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The map label for this gene is ydcN [C]

Identifier: 15922405

GI number: 15922405

Start: 2089442

End: 2090989

Strand: Direct

Name: ydcN [C]

Synonym: ST2084

Alternate gene names: 15922405

Gene position: 2089442-2090989 (Clockwise)

Preceding gene: 15922403

Following gene: 15922407

Centisome position: 77.54

GC content: 40.57

Gene sequence:

>1548_bases
GTGGAGTATCCTATAGGCAAGAGAATAACGGAGATCAGGGAAAAGAAGGGAATTAGCGTAACGCAACTGGCAAAAATGGC
AGGAATATCAAAGTCCACGCTTTGGGAAATAGAGAACGGTAAAATATCTCCCAATATTTCGACCCTTTGGAGCATAGCCA
ACGCATTAGGTGTTACCTTTGGCGAGCTCATAACTTACGATATCGTCGTCAAGGATGAGGGGTCTGAGGTTCGATTAATC
GAACGAAACAACAATATAGAAGTATACTTGATGAAGCTAAACGGCGGTTCGGTTAGATATTCTAAAGCACATAGCAATTC
TCCAGTTGAGTTAGTTCACGTAATTAAGGGAGCTATGATAGTTGGGCCGTTCGAAAGTCCAGAGTTTGTGTGGGAAGGCA
AAACGGTTAAGTTCTATGGAGGCGTGGACCACGTTTATGCGGCAGTAGGGGGAGAGGCGGAAGCAATAGTAACAATGAAG
TACTTCTCCGAAAAGAGTATCACTAAAATTGAATATAGAAATATTAAGGAAATAAAAATAGAAAAATATAGGGATTTGTT
GGAAAGCAAAGCGGTAAATAACAACGTATTAGCAACTGCGATTTCAACCATAAATGATCACGACGCAAGCCACTTGCAGA
ATGACGATCTCTTGCTGTTCGACGTATTATCGGCTGAGCTCAAGACCTTGTCTGGGACTTTAACGGTACCTAAAGTTGTA
TTTAACTCTTTAAACTCTTTAGGATTAGCCGAAAGATCTTCTGTTACTAATTTCGAAAAAAACATAGATGTAGTAAGATA
TTATATCTATGAGCCGCTGCATCCAGGCTATGCGGAGCAAGCAGTTTTCGTCGCGTACGAGCTAGAAAGGAGGAACATAA
AAGACGTGATCAGCATAGGCTGTGGCCCCGCATATCATGAGGCTATGCTTAAAGAAATTATACCAGATTTAAGCATAACT
TGCATAGAAAATTCTCAGTTCTTTAAGAAACTTTCGCCGTTTAAAGTATTAGATGAAGTGCCAAACGGCGTAAACGCAAT
TATATCTTTCGGCTCTTCTCATCATATTGAGGGCTTCCTAAGGCTGGTCGCTAATAAACTAAAGAAGGGCGGGACGCTAA
TAGTCTCGGACGAGTTCGTAGCTGACTATTCTTCAGAAAGGGAGAGAAAGAGGAATGTAATTAGGCACCACTTGGGTTAC
CTGCTCGACATCCCGTTAGCCGAGTTCAGGGAAGAACTACTGTCAGCTTTTAACGCCAAAAATATTGATATTTCGCTCGG
CATACTATCAAGAATTTATATTAAAATATTCAAAAACATTAAGGATAAAATAACAATTGATAGAGTAGAAGATGCATTCT
TAAACTTCTACTATTTGGAGTTAACGTCGCTCCTTTTGGGCGTAGCATACATAGAAGAGAAAAAAGTATCTTTAAATAAA
TTTATTGCAGAATCATCTATGCTTGGCCTGAAGCTCGACTCAGTTTACAAGGTTTACCCCACTGGAAAGGACAGCGGGAC
TTACGTCGTCGCATTCACCAGGGCATGA

Upstream 100 bases:

>100_bases
CTTTTGCCTTTTGTTCGAAATATAAAACATTACGGGCGTTATTTAACGTAAGATGTCCGGTGAAGTAAAGTTTTTAAGGT
TTGAAAAATAAAACCTTAAT

Downstream 100 bases:

>100_bases
GCAATGAAGAGGTTAGGGATAGTCGAAATGATAGTTACAACTGTGATATGGGGCAGCATACCGATCTTGGCCCTATTGTC
AGACTTGCCGTCACCTGTTT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family; Helix-Turn-Helix Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Helix-Turn-Helix Domain Protein; HTH-Type Transcriptional Regulator; Transcriptional Regulator Cro/CI Family Protein; Helix-Turn-Helix Regulatory Protein; Cro/CI Family Transcriptional Regulator; Hth-Type Transcriptional Regulator; Xre Family xin-Antitoxin System Antitoxin Component

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MEYPIGKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKISPNISTLWSIANALGVTFGELITYDIVVKDEGSEVRLI
ERNNNIEVYLMKLNGGSVRYSKAHSNSPVELVHVIKGAMIVGPFESPEFVWEGKTVKFYGGVDHVYAAVGGEAEAIVTMK
YFSEKSITKIEYRNIKEIKIEKYRDLLESKAVNNNVLATAISTINDHDASHLQNDDLLLFDVLSAELKTLSGTLTVPKVV
FNSLNSLGLAERSSVTNFEKNIDVVRYYIYEPLHPGYAEQAVFVAYELERRNIKDVISIGCGPAYHEAMLKEIIPDLSIT
CIENSQFFKKLSPFKVLDEVPNGVNAIISFGSSHHIEGFLRLVANKLKKGGTLIVSDEFVADYSSERERKRNVIRHHLGY
LLDIPLAEFREELLSAFNAKNIDISLGILSRIYIKIFKNIKDKITIDRVEDAFLNFYYLELTSLLLGVAYIEEKKVSLNK
FIAESSMLGLKLDSVYKVYPTGKDSGTYVVAFTRA

Sequences:

>Translated_515_residues
MEYPIGKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKISPNISTLWSIANALGVTFGELITYDIVVKDEGSEVRLI
ERNNNIEVYLMKLNGGSVRYSKAHSNSPVELVHVIKGAMIVGPFESPEFVWEGKTVKFYGGVDHVYAAVGGEAEAIVTMK
YFSEKSITKIEYRNIKEIKIEKYRDLLESKAVNNNVLATAISTINDHDASHLQNDDLLLFDVLSAELKTLSGTLTVPKVV
FNSLNSLGLAERSSVTNFEKNIDVVRYYIYEPLHPGYAEQAVFVAYELERRNIKDVISIGCGPAYHEAMLKEIIPDLSIT
CIENSQFFKKLSPFKVLDEVPNGVNAIISFGSSHHIEGFLRLVANKLKKGGTLIVSDEFVADYSSERERKRNVIRHHLGY
LLDIPLAEFREELLSAFNAKNIDISLGILSRIYIKIFKNIKDKITIDRVEDAFLNFYYLELTSLLLGVAYIEEKKVSLNK
FIAESSMLGLKLDSVYKVYPTGKDSGTYVVAFTRA
>Mature_515_residues
MEYPIGKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKISPNISTLWSIANALGVTFGELITYDIVVKDEGSEVRLI
ERNNNIEVYLMKLNGGSVRYSKAHSNSPVELVHVIKGAMIVGPFESPEFVWEGKTVKFYGGVDHVYAAVGGEAEAIVTMK
YFSEKSITKIEYRNIKEIKIEKYRDLLESKAVNNNVLATAISTINDHDASHLQNDDLLLFDVLSAELKTLSGTLTVPKVV
FNSLNSLGLAERSSVTNFEKNIDVVRYYIYEPLHPGYAEQAVFVAYELERRNIKDVISIGCGPAYHEAMLKEIIPDLSIT
CIENSQFFKKLSPFKVLDEVPNGVNAIISFGSSHHIEGFLRLVANKLKKGGTLIVSDEFVADYSSERERKRNVIRHHLGY
LLDIPLAEFREELLSAFNAKNIDISLGILSRIYIKIFKNIKDKITIDRVEDAFLNFYYLELTSLLLGVAYIEEKKVSLNK
FIAESSMLGLKLDSVYKVYPTGKDSGTYVVAFTRA

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57826; Mature: 57826

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50943 HTH_CROC1 ; PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYPIGKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKISPNISTLWSIANALGVTF
CCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHEEEECCCEECCCHHHHHHHHHHHHHHH
GELITYDIVVKDEGSEVRLIERNNNIEVYLMKLNGGSVRYSKAHSNSPVELVHVIKGAMI
HHHEEEEEEEECCCCEEEEEEECCCEEEEEEEECCCEEEEECCCCCCCHHHHHHHHCCEE
VGPFESPEFVWEGKTVKFYGGVDHVYAAVGGEAEAIVTMKYFSEKSITKIEYRNIKEIKI
ECCCCCCCEEECCCEEEEECCHHHHHHHCCCCCEEEEEEEECCCCCCEEEECCCCHHHHH
EKYRDLLESKAVNNNVLATAISTINDHDASHLQNDDLLLFDVLSAELKTLSGTLTVPKVV
HHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHCCCCCEEEEHHHHHHHHHHCCCCCHHHHH
FNSLNSLGLAERSSVTNFEKNIDVVRYYIYEPLHPGYAEQAVFVAYELERRNIKDVISIG
HHHHHHCCCCHHHCCCCHHHCHHEEEEEEECCCCCCCCCCEEEEEEEECCCCHHHHHHCC
CGPAYHEAMLKEIIPDLSITCIENSQFFKKLSPFKVLDEVPNGVNAIISFGSSHHIEGFL
CCHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCCHHHHHCCCCCHHHHHHH
RLVANKLKKGGTLIVSDEFVADYSSERERKRNVIRHHLGYLLDIPLAEFREELLSAFNAK
HHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
NIDISLGILSRIYIKIFKNIKDKITIDRVEDAFLNFYYLELTSLLLGVAYIEEKKVSLNK
CCEEEHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIAESSMLGLKLDSVYKVYPTGKDSGTYVVAFTRA
HHHHHHHCCEEECCEEEEEECCCCCCEEEEEEECC
>Mature Secondary Structure
MEYPIGKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKISPNISTLWSIANALGVTF
CCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHEEEECCCEECCCHHHHHHHHHHHHHHH
GELITYDIVVKDEGSEVRLIERNNNIEVYLMKLNGGSVRYSKAHSNSPVELVHVIKGAMI
HHHEEEEEEEECCCCEEEEEEECCCEEEEEEEECCCEEEEECCCCCCCHHHHHHHHCCEE
VGPFESPEFVWEGKTVKFYGGVDHVYAAVGGEAEAIVTMKYFSEKSITKIEYRNIKEIKI
ECCCCCCCEEECCCEEEEECCHHHHHHHCCCCCEEEEEEEECCCCCCEEEECCCCHHHHH
EKYRDLLESKAVNNNVLATAISTINDHDASHLQNDDLLLFDVLSAELKTLSGTLTVPKVV
HHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHCCCCCEEEEHHHHHHHHHHCCCCCHHHHH
FNSLNSLGLAERSSVTNFEKNIDVVRYYIYEPLHPGYAEQAVFVAYELERRNIKDVISIG
HHHHHHCCCCHHHCCCCHHHCHHEEEEEEECCCCCCCCCCEEEEEEEECCCCHHHHHHCC
CGPAYHEAMLKEIIPDLSITCIENSQFFKKLSPFKVLDEVPNGVNAIISFGSSHHIEGFL
CCHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCCHHHHHCCCCCHHHHHHH
RLVANKLKKGGTLIVSDEFVADYSSERERKRNVIRHHLGYLLDIPLAEFREELLSAFNAK
HHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
NIDISLGILSRIYIKIFKNIKDKITIDRVEDAFLNFYYLELTSLLLGVAYIEEKKVSLNK
CCEEEHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIAESSMLGLKLDSVYKVYPTGKDSGTYVVAFTRA
HHHHHHHCCEEECCEEEEEECCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA