Click here to switch to the map view.

The map label for this gene is ybaO [C]

Identifier: 15921765

GI number: 15921765

Start: 1473931

End: 1474407

Strand: Reverse

Name: ybaO [C]

Synonym: ST1473

Alternate gene names: 15921765

Gene position: 1474407-1473931 (Counterclockwise)

Preceding gene: 15921766

Following gene: 15921764

Centisome position: 54.71

GC content: 30.19

Gene sequence:

>477_bases
ATGAAATTTATGTCGGATAAAAGACGTGTTGAAATAGATACAGTAGATAAAAAATTGCTTATGGAATTGTTAAGAGATTC
AAGAGTTAGTTTAAGAAGATTAGCAGAAGAAATGAATGTTTCTCCTGCAACATTACATAACAGGCTCCTTAGATTAATGC
AGGAAGGTGTTGTAAAAGGTTTTATAGCACTATTAGACTATACTAAATTAGGCTATTCTCTCACTAGTATTATTATGGCT
AAAGTAGATGGCAAACATTTGGTTGAATTTGAAAAGGAAATCTCAAATTATGATAATGTTATAGCAGTTTATGATATTGT
AGGAGAATATGATGTTGCAATAGTTGCTAAGTTCAGAAGCGTAGAAGATTTAGATAACTTTCTTAAAAACTTACTAAAGA
ACCCAAAAGTTGAAAGAACGCACACTAGCATTGTTTTAAATGTTGTTAAGGAAGATCCAAGAATAAGAGTAATATGA

Upstream 100 bases:

>100_bases
TTGGAGTTCAGCTGATATTACAAGGTATATCTCAAGTAAAGTTTGCATGATAAATATCTTCGTAAGATGAAAATTTTTTA
ATCACCTCATCAATTTTATT

Downstream 100 bases:

>100_bases
ATTTTTAATGATAAATCATTACCAAAAGCCTTATATATAGTATTATGACTTTACTCTTTTATATGGTGAAATAATGAAGT
TCTGCCCTAAATGTGGAGGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKFMSDKRRVEIDTVDKKLLMELLRDSRVSLRRLAEEMNVSPATLHNRLLRLMQEGVVKGFIALLDYTKLGYSLTSIIMA
KVDGKHLVEFEKEISNYDNVIAVYDIVGEYDVAIVAKFRSVEDLDNFLKNLLKNPKVERTHTSIVLNVVKEDPRIRVI

Sequences:

>Translated_158_residues
MKFMSDKRRVEIDTVDKKLLMELLRDSRVSLRRLAEEMNVSPATLHNRLLRLMQEGVVKGFIALLDYTKLGYSLTSIIMA
KVDGKHLVEFEKEISNYDNVIAVYDIVGEYDVAIVAKFRSVEDLDNFLKNLLKNPKVERTHTSIVLNVVKEDPRIRVI
>Mature_158_residues
MKFMSDKRRVEIDTVDKKLLMELLRDSRVSLRRLAEEMNVSPATLHNRLLRLMQEGVVKGFIALLDYTKLGYSLTSIIMA
KVDGKHLVEFEKEISNYDNVIAVYDIVGEYDVAIVAKFRSVEDLDNFLKNLLKNPKVERTHTSIVLNVVKEDPRIRVI

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=143, Percent_Identity=28.6713286713287, Blast_Score=68, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18265; Mature: 18265

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFMSDKRRVEIDTVDKKLLMELLRDSRVSLRRLAEEMNVSPATLHNRLLRLMQEGVVKG
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FIALLDYTKLGYSLTSIIMAKVDGKHLVEFEKEISNYDNVIAVYDIVGEYDVAIVAKFRS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHHH
VEDLDNFLKNLLKNPKVERTHTSIVLNVVKEDPRIRVI
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure
MKFMSDKRRVEIDTVDKKLLMELLRDSRVSLRRLAEEMNVSPATLHNRLLRLMQEGVVKG
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FIALLDYTKLGYSLTSIIMAKVDGKHLVEFEKEISNYDNVIAVYDIVGEYDVAIVAKFRS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHHH
VEDLDNFLKNLLKNPKVERTHTSIVLNVVKEDPRIRVI
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA