Click here to switch to the map view.

The map label for this gene is priB

Identifier: 15921720

GI number: 15921720

Start: 1434307

End: 1435227

Strand: Reverse

Name: priB

Synonym: ST1431

Alternate gene names: 15921720

Gene position: 1435227-1434307 (Counterclockwise)

Preceding gene: 15921722

Following gene: 15921718

Centisome position: 53.26

GC content: 25.19

Gene sequence:

>921_bases
GTGCTAATACTAGACTTTAGAAAATATCCGTTTTTAAAACCATTAGAAGATGAACTAAAAAAATACGCCGGAGGAATAAG
TCTAAATGATTTATTAGTTAGTGGGAGTTATTATCTTGATCAAGCTAAAGAAAGAATAGATAAAATTTTAAAAGATAAAG
AATTAGAATCTTATGATAAGATAAAGGATTCTGTTCTAGTATTTTATACAACTTTATACCTTGTAGCTGCATTGGATAAT
GATATGCTGAAGAAAAAGTTCCTAGATAAAGAGTCACAAATAATTGAGAAAAATTTGCTTAATGAAAGTGAAGAAACACT
AGTTGAAATAGCAAATTATTTAGGATTAAATATTAATTATAATAATATAGAAATAAAATATAAGAAAAATAAAAAGACTC
TTTCTTTATCGCTTAAATATTCTTTGAATTTTATTGATTTTTTAAAATACACAAGAGAACTTAGAAAAATAGATAACAAA
TTTAGTTTAGCATCACATATACTTAAAGATGGTAAAGTATATTTAACAAAAGAAGAAATTGTAAGGATCCTAGTATTTCA
AATAAGAGATAAACTAATGAAGATGGTAAATGTTAGTGACGTTGTAATCCCAGAACAAATTAGAAAGCTTGCAGATGAAT
TAAAGGGAAGAAAAACGCCGCCTTGTATTTTAGAATTAAAGAGAAAAAAGGAGCTAAATAATACAGAACTCGGAGTTTTA
ATAGCATATTATATCGATATAGGTGATGAAAAAAGTGTTATAGATCTTACAAAAGATGAGAATATTGTTAAAAAATTTAA
AGGAGATAAAAAAACTAAGTATATATTATATTCTTGTAAAAAGATGAAAGAACTTGGTCTTTGTGTAGCCTCTTGTAATA
CTTTAAATCCTCTTCAATTTTATTATGGTAAACTGGAATAA

Upstream 100 bases:

>100_bases
ATAAGGCCATGCAGAGGCTACAAATATCTTCATATTGCTCTTAATTCCTTCGTAAAGGTAATAAGCTTATAAAAACTTTG
CCACCAAATTATTAAAGGAA

Downstream 100 bases:

>100_bases
ACTGCAATAAATCTTTGGATAACAGTTATTATAGAAAGTATTAAGAATATGAGAAAGAAATAATATGAAATAGTAAAAGA
TAATAGATACAACAATAAAA

Product: DNA primase large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLILDFRKYPFLKPLEDELKKYAGGISLNDLLVSGSYYLDQAKERIDKILKDKELESYDKIKDSVLVFYTTLYLVAALDN
DMLKKKFLDKESQIIEKNLLNESEETLVEIANYLGLNINYNNIEIKYKKNKKTLSLSLKYSLNFIDFLKYTRELRKIDNK
FSLASHILKDGKVYLTKEEIVRILVFQIRDKLMKMVNVSDVVIPEQIRKLADELKGRKTPPCILELKRKKELNNTELGVL
IAYYIDIGDEKSVIDLTKDENIVKKFKGDKKTKYILYSCKKMKELGLCVASCNTLNPLQFYYGKLE

Sequences:

>Translated_306_residues
MLILDFRKYPFLKPLEDELKKYAGGISLNDLLVSGSYYLDQAKERIDKILKDKELESYDKIKDSVLVFYTTLYLVAALDN
DMLKKKFLDKESQIIEKNLLNESEETLVEIANYLGLNINYNNIEIKYKKNKKTLSLSLKYSLNFIDFLKYTRELRKIDNK
FSLASHILKDGKVYLTKEEIVRILVFQIRDKLMKMVNVSDVVIPEQIRKLADELKGRKTPPCILELKRKKELNNTELGVL
IAYYIDIGDEKSVIDLTKDENIVKKFKGDKKTKYILYSCKKMKELGLCVASCNTLNPLQFYYGKLE
>Mature_306_residues
MLILDFRKYPFLKPLEDELKKYAGGISLNDLLVSGSYYLDQAKERIDKILKDKELESYDKIKDSVLVFYTTLYLVAALDN
DMLKKKFLDKESQIIEKNLLNESEETLVEIANYLGLNINYNNIEIKYKKNKKTLSLSLKYSLNFIDFLKYTRELRKIDNK
FSLASHILKDGKVYLTKEEIVRILVFQIRDKLMKMVNVSDVVIPEQIRKLADELKGRKTPPCILELKRKKELNNTELGVL
IAYYIDIGDEKSVIDLTKDENIVKKFKGDKKTKYILYSCKKMKELGLCVASCNTLNPLQFYYGKLE

Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis

COG id: COG2219

COG function: function code L; Eukaryotic-type DNA primase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic-type primase large subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PRIL_SULTO (Q971C2)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_377389.1
- ProteinModelPortal:   Q971C2
- SMR:   Q971C2
- GeneID:   1459462
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST1431
- NMPDR:   fig|273063.1.peg.1557
- HOGENOM:   HBG704862
- OMA:   GRKTPPC
- ProtClustDB:   PRK09568
- BioCyc:   STOK273063:ST1431-MONOMER
- HAMAP:   MF_00701
- InterPro:   IPR007238

Pfam domain/function: PF04104 DNA_primase_lrg

EC number: NA

Molecular weight: Translated: 35754; Mature: 35754

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILDFRKYPFLKPLEDELKKYAGGISLNDLLVSGSYYLDQAKERIDKILKDKELESYDK
CEEEECCCCCCCCCHHHHHHHHHCCCCHHHHEECCHHHHHHHHHHHHHHHHCCCHHHHHH
IKDSVLVFYTTLYLVAALDNDMLKKKFLDKESQIIEKNLLNESEETLVEIANYLGLNINY
HHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEE
NNIEIKYKKNKKTLSLSLKYSLNFIDFLKYTRELRKIDNKFSLASHILKDGKVYLTKEEI
CEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHH
VRILVFQIRDKLMKMVNVSDVVIPEQIRKLADELKGRKTPPCILELKRKKELNNTELGVL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHEEE
IAYYIDIGDEKSVIDLTKDENIVKKFKGDKKTKYILYSCKKMKELGLCVASCNTLNPLQF
EEEEEECCCCCCEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
YYGKLE
HCCCCC
>Mature Secondary Structure
MLILDFRKYPFLKPLEDELKKYAGGISLNDLLVSGSYYLDQAKERIDKILKDKELESYDK
CEEEECCCCCCCCCHHHHHHHHHCCCCHHHHEECCHHHHHHHHHHHHHHHHCCCHHHHHH
IKDSVLVFYTTLYLVAALDNDMLKKKFLDKESQIIEKNLLNESEETLVEIANYLGLNINY
HHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEE
NNIEIKYKKNKKTLSLSLKYSLNFIDFLKYTRELRKIDNKFSLASHILKDGKVYLTKEEI
CEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHH
VRILVFQIRDKLMKMVNVSDVVIPEQIRKLADELKGRKTPPCILELKRKKELNNTELGVL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHEEE
IAYYIDIGDEKSVIDLTKDENIVKKFKGDKKTKYILYSCKKMKELGLCVASCNTLNPLQF
EEEEEECCCCCCEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
YYGKLE
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479