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The map label for this gene is rpl7ae

Identifier: 15921713

GI number: 15921713

Start: 1427983

End: 1428363

Strand: Direct

Name: rpl7ae

Synonym: ST1424

Alternate gene names: 15921713

Gene position: 1427983-1428363 (Clockwise)

Preceding gene: 15921712

Following gene: 15921714

Centisome position: 52.99

GC content: 39.11

Gene sequence:

>381_bases
ATGTCTAAACCCTCATATGTTAAATTCGATGTACCAGAGGATTTGGCTAATAAGGTATTAGATGCTGTAAGAAAAGCAAA
GGAATCTGGAAAGATAAAGAAAGGAACTAATGAGACAACAAAAGCTGTAGAAAGAGGCCAAGCCAAGCTGGTTGTAATTG
CAACAGACGTGCAGCCCGAAGAAATAGTAGCTCACTTACCACTATTATGCGAGGAAAAGAAAATACCATATGTTTATGTC
CCGTCAAAGAAGGCATTGGGAGAAGCATGTGGCTTACAAGTGGCTGCTGCCTCAGCGGCTATTATAGATCCTGGAGAAGC
AAAGGATTTATTAGATGAGATTGTAAAAAGAGTAGAAGAATTAAAAGGTAAAGCAAGCTAA

Upstream 100 bases:

>100_bases
GATCGATAATAAGGTTACCGTAATATTCTCACATGAGTAACTTTATTAACCTAATAAGTTAATTCTTTTTTGCGTGACGA
AATAAGAGGAGGATGAACGC

Downstream 100 bases:

>100_bases
ATTTTTTGGTATGAAAATTTTTGCTATAGGGAATGTTTTTAATCCTTCAGGTGTTTCTTCGCACATTATAAATGTTCTTA
AAGGTCTTTCTAAATTAGGT

Product: 50S ribosomal protein L7Ae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MSKPSYVKFDVPEDLANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPEEIVAHLPLLCEEKKIPYVYV
PSKKALGEACGLQVAAASAAIIDPGEAKDLLDEIVKRVEELKGKAS

Sequences:

>Translated_126_residues
MSKPSYVKFDVPEDLANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPEEIVAHLPLLCEEKKIPYVYV
PSKKALGEACGLQVAAASAAIIDPGEAKDLLDEIVKRVEELKGKAS
>Mature_125_residues
SKPSYVKFDVPEDLANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPEEIVAHLPLLCEEKKIPYVYVP
SKKALGEACGLQVAAASAAIIDPGEAKDLLDEIVKRVEELKGKAS

Specific function: Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs

COG id: COG1358

COG function: function code J; Ribosomal protein HS6-type (S12/L30/L7a)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L7Ae family

Homologues:

Organism=Homo sapiens, GI4826860, Length=89, Percent_Identity=48.314606741573, Blast_Score=92, Evalue=1e-19,
Organism=Homo sapiens, GI51317376, Length=89, Percent_Identity=48.314606741573, Blast_Score=92, Evalue=1e-19,
Organism=Homo sapiens, GI8923444, Length=107, Percent_Identity=33.6448598130841, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17535189, Length=110, Percent_Identity=44.5454545454545, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17555988, Length=113, Percent_Identity=32.7433628318584, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI32565833, Length=111, Percent_Identity=36.9369369369369, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI32565827, Length=96, Percent_Identity=37.5, Blast_Score=65, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6320809, Length=124, Percent_Identity=41.1290322580645, Blast_Score=98, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6319993, Length=133, Percent_Identity=36.0902255639098, Blast_Score=87, Evalue=1e-18,
Organism=Drosophila melanogaster, GI17864298, Length=109, Percent_Identity=41.2844036697248, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21356151, Length=101, Percent_Identity=36.6336633663366, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL7A_SULTO (Q971C9)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_377382.1
- ProteinModelPortal:   Q971C9
- SMR:   Q971C9
- GeneID:   1459454
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST1424
- NMPDR:   fig|273063.1.peg.1550
- HOGENOM:   HBG739027
- OMA:   GTNEATK
- ProtClustDB:   PRK04175
- BioCyc:   STOK273063:ST1424-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00326
- InterPro:   IPR004038
- InterPro:   IPR018492
- InterPro:   IPR022481
- InterPro:   IPR004037
- InterPro:   IPR000948
- PRINTS:   PR00881
- PRINTS:   PR00884
- TIGRFAMs:   TIGR03677

Pfam domain/function: PF01248 Ribosomal_L7Ae

EC number: NA

Molecular weight: Translated: 13570; Mature: 13439

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS01082 RIBOSOMAL_L7AE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPSYVKFDVPEDLANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPE
CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCHH
EIVAHLPLLCEEKKIPYVYVPSKKALGEACGLQVAAASAAIIDPGEAKDLLDEIVKRVEE
HHHHHCCHHCCCCCCCEEECCCHHHHHHHHCCHHHHCCCEEECCCCHHHHHHHHHHHHHH
LKGKAS
HCCCCC
>Mature Secondary Structure 
SKPSYVKFDVPEDLANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPE
CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCHH
EIVAHLPLLCEEKKIPYVYVPSKKALGEACGLQVAAASAAIIDPGEAKDLLDEIVKRVEE
HHHHHCCHHCCCCCCCEEECCCHHHHHHHHCCHHHHCCCEEECCCCHHHHHHHHHHHHHH
LKGKAS
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479