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The map label for this gene is xerD [C]

Identifier: 15921682

GI number: 15921682

Start: 1397455

End: 1398309

Strand: Reverse

Name: xerD [C]

Synonym: ST1393

Alternate gene names: 15921682

Gene position: 1398309-1397455 (Counterclockwise)

Preceding gene: 15921683

Following gene: 15921677

Centisome position: 51.89

GC content: 28.07

Gene sequence:

>855_bases
GTGAAACTACAATTAGGTAAGCCAGATGTCATTATCAACCCATTCGACGAATTTATTACGGCTTTAATGATTGCAGGAGC
CTCTGAAAATACAATAAGATTATATTCAATAGCAATATCTGATTTTCTTAGTTATATAAGAAAAGATCCAAGGACTGTTA
CCACCTATGATTTAAATAATTGGATTAGAAATATTCTAAGTAGAGAAACAAAATCTAAAAATGAAAATGAGATAGAAAAA
AGAAGAAAAAAATCAGTGACTGCAAGGCATTATATAATAGCAGTATTAAGATTCTTAAAGTGGTTAGGAGTAGATGTAAA
ACCAACTATACCTAGAATTAGAAGAAAAGAAATTAGAGCTTTATCAGAAGAAGAAATAGTTAAGATAAAAGAAAATGTGA
AAAAACTAAAAGACAGACTACTAATTCAACTTTTATTAGATACAGGATTACGTTCTAAAGAATTACTTTCTATTAAAAAA
TCCGACATAAACATAGAAAGAAGATATATAATTGTTAGAAATACAAAGAATGGTGAGGAAAGAATTGTATTTTTCACAGA
AGAAACAGCTAGGTTATTAAAGAGTTATTTGAGGAACATAGAAGATAATGGAATACTTTTCAATATGACTTATCATGCTT
TATATCGGAAACTTAAAAGATTAGGCAAAAAATTAGGGATTGACTTAAGACCACATATTTTGAGACATACATTTGCTACA
CAAGCTATAAGAAAAGGAATGCCATTACCAGTAGTTCAAAAATTGTTAGGGCATAAGGATATCAGAACAACACAAATATA
TACTCATTTAGTAACAGAAGACTTACAGGAAATTTATAAGAAAATATTTGGTTAA

Upstream 100 bases:

>100_bases
GTAGTTTTGCCATTGGGTATTTCTTTCTATATTTTAATAGAAATGTTTATGGTAACACTCTATTACCTTAATAAGTGTTA
CTAAGACCAAGATATCTAAT

Downstream 100 bases:

>100_bases
GCTTTCCCAAGAAATCTCCATTTTATCATTTCATACACATATTCCGCAAGATCTTTTACACTATTAAACGAGGCTGTTTG
TAAATGAAGATATTCGAATT

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MKLQLGKPDVIINPFDEFITALMIAGASENTIRLYSIAISDFLSYIRKDPRTVTTYDLNNWIRNILSRETKSKNENEIEK
RRKKSVTARHYIIAVLRFLKWLGVDVKPTIPRIRRKEIRALSEEEIVKIKENVKKLKDRLLIQLLLDTGLRSKELLSIKK
SDINIERRYIIVRNTKNGEERIVFFTEETARLLKSYLRNIEDNGILFNMTYHALYRKLKRLGKKLGIDLRPHILRHTFAT
QAIRKGMPLPVVQKLLGHKDIRTTQIYTHLVTEDLQEIYKKIFG

Sequences:

>Translated_284_residues
MKLQLGKPDVIINPFDEFITALMIAGASENTIRLYSIAISDFLSYIRKDPRTVTTYDLNNWIRNILSRETKSKNENEIEK
RRKKSVTARHYIIAVLRFLKWLGVDVKPTIPRIRRKEIRALSEEEIVKIKENVKKLKDRLLIQLLLDTGLRSKELLSIKK
SDINIERRYIIVRNTKNGEERIVFFTEETARLLKSYLRNIEDNGILFNMTYHALYRKLKRLGKKLGIDLRPHILRHTFAT
QAIRKGMPLPVVQKLLGHKDIRTTQIYTHLVTEDLQEIYKKIFG
>Mature_284_residues
MKLQLGKPDVIINPFDEFITALMIAGASENTIRLYSIAISDFLSYIRKDPRTVTTYDLNNWIRNILSRETKSKNENEIEK
RRKKSVTARHYIIAVLRFLKWLGVDVKPTIPRIRRKEIRALSEEEIVKIKENVKKLKDRLLIQLLLDTGLRSKELLSIKK
SDINIERRYIIVRNTKNGEERIVFFTEETARLLKSYLRNIEDNGILFNMTYHALYRKLKRLGKKLGIDLRPHILRHTFAT
QAIRKGMPLPVVQKLLGHKDIRTTQIYTHLVTEDLQEIYKKIFG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=296, Percent_Identity=28.3783783783784, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790244, Length=227, Percent_Identity=26.431718061674, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33451; Mature: 33451

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLQLGKPDVIINPFDEFITALMIAGASENTIRLYSIAISDFLSYIRKDPRTVTTYDLNN
CCCCCCCCCEEECCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEEEHHH
WIRNILSRETKSKNENEIEKRRKKSVTARHYIIAVLRFLKWLGVDVKPTIPRIRRKEIRA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LSEEEIVKIKENVKKLKDRLLIQLLLDTGLRSKELLSIKKSDINIERRYIIVRNTKNGEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCC
RIVFFTEETARLLKSYLRNIEDNGILFNMTYHALYRKLKRLGKKLGIDLRPHILRHTFAT
EEEEEEHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
QAIRKGMPLPVVQKLLGHKDIRTTQIYTHLVTEDLQEIYKKIFG
HHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLQLGKPDVIINPFDEFITALMIAGASENTIRLYSIAISDFLSYIRKDPRTVTTYDLNN
CCCCCCCCCEEECCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEEEHHH
WIRNILSRETKSKNENEIEKRRKKSVTARHYIIAVLRFLKWLGVDVKPTIPRIRRKEIRA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LSEEEIVKIKENVKKLKDRLLIQLLLDTGLRSKELLSIKKSDINIERRYIIVRNTKNGEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCC
RIVFFTEETARLLKSYLRNIEDNGILFNMTYHALYRKLKRLGKKLGIDLRPHILRHTFAT
EEEEEEHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
QAIRKGMPLPVVQKLLGHKDIRTTQIYTHLVTEDLQEIYKKIFG
HHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA