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The map label for this gene is ydcM [C]

Identifier: 15921307

GI number: 15921307

Start: 1041116

End: 1042402

Strand: Direct

Name: ydcM [C]

Synonym: ST1056

Alternate gene names: 15921307

Gene position: 1041116-1042402 (Clockwise)

Preceding gene: 15921306

Following gene: 15921309

Centisome position: 38.63

GC content: 42.35

Gene sequence:

>1287_bases
GTGTCGAAGAACTTAAGGCTTAAACCAGAAGAGGAGTACATTTACCTAACATACTCCATCAAGAACGATAAGAAGGAGGA
GAGCAAGATATTACTAGAGAACTATAGAGTACTACTACAGAAAGCATTAGACTGGTTGTGGGAAAAGACAAAGGTTGAGA
AGAAGGAAATGAAGAAGGGTAAGAAAATTTTCATGAAGATCAAAATAACCCTACCAAAGAAGAAGGAAGTATACAAGACG
TTGAGGGACGAATTAGAGAAGAACAACACTCTAGCTTCACACTACGTTGACAAGGCTATAAACGATGCTTACTCAATATT
GAGGGGTTGGAAGAGGAGGGCTGAAAAGGGGCAAGCATCATTAAGAAAACCTAGATTAAAGAAGGTTTACGTTAGGGTAA
AGTCAACACTTAGGAAAGTTGAGGGTGAGAGCGTTAGGATTACTGTAAGACCTTACGATTATATTACATTTTCGTGGTCT
CAGACTTGGTTTTCACGAAGAGTTAAGGGACTTGAGTTAGGTGAGCCTATAATTAAGGAGGATAAAGTGTACTTGCCATT
TCGTTATAAGTTGCCTTGGTTTACTCCCCTAGATTTTCTAGCAATTGATAGTAACCTTTACACATTAGACGCCTATGATG
GTGATAAGTTCATCACATTTTCCCTGAAAGAGCTATACAGTTTGAAGTTTGGGATGGAGTTGAAGAGGAGTAGAATACAA
CGTTTTGCCTCAAAACATGGTAGGAAGGGTAAGGAGTTGCTAAAGAAGTACTCTCACCGTGAGAGGAACCGCGTACTAGA
TTATATCCACAAGTTAGTCAACGAATTGTTAGAGATGTATCCCATTACGATGTTTGCTGTTGAGAAGTTAAATAAGCAAT
TAATGTTTGACGACGCAAATGACTCCCTCTCTAAGAAGATATCGAGGACTGTATGGAGGACTATACACCATGTGTTGAGG
TACAAGGCTCCCCTTTACGGTTCCTTCGTGAAAGAGGCGAACCCATACCTCACATCTAAGTCCTGCCCCAGATGTGGATG
GGTTTCCCGAAAGGTTGGCGGGACTTTTAGGTGCGAGAGGTGTGGGTTCACTCTTGATAGGCAGTTGAATGCGTCTCTAA
ATATCTACCTCAAGATGTGCGGGTTACCCCACATCCGTGATATTCCAAGGGTGTGGGTTGGGGTTACCCCGCTAAAGGGG
CGGAGGAGGATGAGTAGGGCAATGCCCCGTGACCCTGGTGAAGCCCAAGGACTAAGGATTGGATTCAAATTCATGAAAAT
TCAATGA

Upstream 100 bases:

>100_bases
CCAGAACAAGAGTTGATAGAGGATCTAATCCCAATCCTAGTATCATTCAGCGGGAAATTACACAGAATGACGAGTAACAA
ATACGAAAAGGTGAAGAAAT

Downstream 100 bases:

>100_bases
AGCCCAAACCCCTAGTTTACTTAACAGATAAAACTTCAATCTTGTGTTATTTAGTATAAGCTTATTCCTACTGTGACGTA
TAATTTTCGAATAGGAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MSKNLRLKPEEEYIYLTYSIKNDKKEESKILLENYRVLLQKALDWLWEKTKVEKKEMKKGKKIFMKIKITLPKKKEVYKT
LRDELEKNNTLASHYVDKAINDAYSILRGWKRRAEKGQASLRKPRLKKVYVRVKSTLRKVEGESVRITVRPYDYITFSWS
QTWFSRRVKGLELGEPIIKEDKVYLPFRYKLPWFTPLDFLAIDSNLYTLDAYDGDKFITFSLKELYSLKFGMELKRSRIQ
RFASKHGRKGKELLKKYSHRERNRVLDYIHKLVNELLEMYPITMFAVEKLNKQLMFDDANDSLSKKISRTVWRTIHHVLR
YKAPLYGSFVKEANPYLTSKSCPRCGWVSRKVGGTFRCERCGFTLDRQLNASLNIYLKMCGLPHIRDIPRVWVGVTPLKG
RRRMSRAMPRDPGEAQGLRIGFKFMKIQ

Sequences:

>Translated_428_residues
MSKNLRLKPEEEYIYLTYSIKNDKKEESKILLENYRVLLQKALDWLWEKTKVEKKEMKKGKKIFMKIKITLPKKKEVYKT
LRDELEKNNTLASHYVDKAINDAYSILRGWKRRAEKGQASLRKPRLKKVYVRVKSTLRKVEGESVRITVRPYDYITFSWS
QTWFSRRVKGLELGEPIIKEDKVYLPFRYKLPWFTPLDFLAIDSNLYTLDAYDGDKFITFSLKELYSLKFGMELKRSRIQ
RFASKHGRKGKELLKKYSHRERNRVLDYIHKLVNELLEMYPITMFAVEKLNKQLMFDDANDSLSKKISRTVWRTIHHVLR
YKAPLYGSFVKEANPYLTSKSCPRCGWVSRKVGGTFRCERCGFTLDRQLNASLNIYLKMCGLPHIRDIPRVWVGVTPLKG
RRRMSRAMPRDPGEAQGLRIGFKFMKIQ
>Mature_427_residues
SKNLRLKPEEEYIYLTYSIKNDKKEESKILLENYRVLLQKALDWLWEKTKVEKKEMKKGKKIFMKIKITLPKKKEVYKTL
RDELEKNNTLASHYVDKAINDAYSILRGWKRRAEKGQASLRKPRLKKVYVRVKSTLRKVEGESVRITVRPYDYITFSWSQ
TWFSRRVKGLELGEPIIKEDKVYLPFRYKLPWFTPLDFLAIDSNLYTLDAYDGDKFITFSLKELYSLKFGMELKRSRIQR
FASKHGRKGKELLKKYSHRERNRVLDYIHKLVNELLEMYPITMFAVEKLNKQLMFDDANDSLSKKISRTVWRTIHHVLRY
KAPLYGSFVKEANPYLTSKSCPRCGWVSRKVGGTFRCERCGFTLDRQLNASLNIYLKMCGLPHIRDIPRVWVGVTPLKGR
RRMSRAMPRDPGEAQGLRIGFKFMKIQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 50841; Mature: 50710

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNLRLKPEEEYIYLTYSIKNDKKEESKILLENYRVLLQKALDWLWEKTKVEKKEMKKG
CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KKIFMKIKITLPKKKEVYKTLRDELEKNNTLASHYVDKAINDAYSILRGWKRRAEKGQAS
CEEEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRKPRLKKVYVRVKSTLRKVEGESVRITVRPYDYITFSWSQTWFSRRVKGLELGEPIIKE
HCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEEHHHHHHHHHCCCCCCCCCCCCC
DKVYLPFRYKLPWFTPLDFLAIDSNLYTLDAYDGDKFITFSLKELYSLKFGMELKRSRIQ
CCEEEEEEECCCCCCCCHHEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
RFASKHGRKGKELLKKYSHRERNRVLDYIHKLVNELLEMYPITMFAVEKLNKQLMFDDAN
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEECCCC
DSLSKKISRTVWRTIHHVLRYKAPLYGSFVKEANPYLTSKSCPRCGWVSRKVGGTFRCER
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCEEEHH
CGFTLDRQLNASLNIYLKMCGLPHIRDIPRVWVGVTPLKGRRRMSRAMPRDPGEAQGLRI
CCCEECCCCCCCEEEEEEECCCCCCCCCCHHHEECCCCCHHHHHHHCCCCCCCCCCCEEE
GFKFMKIQ
EEEEEEEC
>Mature Secondary Structure 
SKNLRLKPEEEYIYLTYSIKNDKKEESKILLENYRVLLQKALDWLWEKTKVEKKEMKKG
CCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KKIFMKIKITLPKKKEVYKTLRDELEKNNTLASHYVDKAINDAYSILRGWKRRAEKGQAS
CEEEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRKPRLKKVYVRVKSTLRKVEGESVRITVRPYDYITFSWSQTWFSRRVKGLELGEPIIKE
HCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEEHHHHHHHHHCCCCCCCCCCCCC
DKVYLPFRYKLPWFTPLDFLAIDSNLYTLDAYDGDKFITFSLKELYSLKFGMELKRSRIQ
CCEEEEEEECCCCCCCCHHEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
RFASKHGRKGKELLKKYSHRERNRVLDYIHKLVNELLEMYPITMFAVEKLNKQLMFDDAN
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEECCCC
DSLSKKISRTVWRTIHHVLRYKAPLYGSFVKEANPYLTSKSCPRCGWVSRKVGGTFRCER
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCEEEHH
CGFTLDRQLNASLNIYLKMCGLPHIRDIPRVWVGVTPLKGRRRMSRAMPRDPGEAQGLRI
CCCEECCCCCCCEEEEEEECCCCCCCCCCHHHEECCCCCHHHHHHHCCCCCCCCCCCEEE
GFKFMKIQ
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]