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The map label for this gene is rpl21e

Identifier: 15920671

GI number: 15920671

Start: 461302

End: 461613

Strand: Reverse

Name: rpl21e

Synonym: ST0459

Alternate gene names: 15920671

Gene position: 461613-461302 (Counterclockwise)

Preceding gene: 15920674

Following gene: 15920670

Centisome position: 17.13

GC content: 33.01

Gene sequence:

>312_bases
ATGGTTAAGCATTCAAAGGGTTATCGAACAAGAACTAGAAAGCTCTTAACTAAGAATGTGAGAGAAAGAGGTGCAGTACC
AAGATTAAGTCTATTAATGGAAGAATTTAAAGAAGGAGATTATGTAGTAATTAAAATTAATCCTTCTGTACATAAAGGAA
TGCCTCATAGAAGATATCATGGTAAGGTAGGTGTAATTCAAGGAAAAAGAGGTAAAGCCTATATCGTAAGAGTTACATTA
GGTGATAAAGAGAAGGTTATCATAGTTAGACCAGAGCACTTGGCAAAATTTAATGGTATTAAAAATGGGTGA

Upstream 100 bases:

>100_bases
TGTTATATTGCGTCTCTCAAAAGAAAAGAATTTCTACTTACCAGCAAAGGAAAACAAAAATCTTAATTGTCACTTAGTTT
TAGTTTGATAAGGAATAAAC

Downstream 100 bases:

>100_bases
AGATCTTGTCTTTTTCTCTAAAAATAGAAGAAGAGCATTATGTTCCGTATTCTTTTGCTAAAAAAATTCTTCAAGATCTT
ATATCTAATGGTACTTCTTC

Product: 50S ribosomal protein L21e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MVKHSKGYRTRTRKLLTKNVRERGAVPRLSLLMEEFKEGDYVVIKINPSVHKGMPHRRYHGKVGVIQGKRGKAYIVRVTL
GDKEKVIIVRPEHLAKFNGIKNG

Sequences:

>Translated_103_residues
MVKHSKGYRTRTRKLLTKNVRERGAVPRLSLLMEEFKEGDYVVIKINPSVHKGMPHRRYHGKVGVIQGKRGKAYIVRVTL
GDKEKVIIVRPEHLAKFNGIKNG
>Mature_103_residues
MVKHSKGYRTRTRKLLTKNVRERGAVPRLSLLMEEFKEGDYVVIKINPSVHKGMPHRRYHGKVGVIQGKRGKAYIVRVTL
GDKEKVIIVRPEHLAKFNGIKNG

Specific function: Unknown

COG id: COG2139

COG function: function code J; Ribosomal protein L21E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21e family

Homologues:

Organism=Saccharomyces cerevisiae, GI6319668, Length=94, Percent_Identity=41.4893617021277, Blast_Score=63, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6325178, Length=94, Percent_Identity=40.4255319148936, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL21_SULTO (Q975F2)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376340.1
- ProteinModelPortal:   Q975F2
- SMR:   Q975F2
- GeneID:   1458396
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST0459
- NMPDR:   fig|273063.1.peg.508
- HOGENOM:   HBG497499
- OMA:   RFHGKTG
- ProtClustDB:   PRK04306
- BioCyc:   STOK273063:ST0459-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00369
- InterPro:   IPR001147
- InterPro:   IPR022856
- InterPro:   IPR018259
- InterPro:   IPR008991
- PANTHER:   PTHR20981

Pfam domain/function: PF01157 Ribosomal_L21e; SSF50104 Transl_SH3_like

EC number: NA

Molecular weight: Translated: 11815; Mature: 11815

Theoretical pI: Translated: 11.43; Mature: 11.43

Prosite motif: PS01171 RIBOSOMAL_L21E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKHSKGYRTRTRKLLTKNVRERGAVPRLSLLMEEFKEGDYVVIKINPSVHKGMPHRRYH
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCC
GKVGVIQGKRGKAYIVRVTLGDKEKVIIVRPEHLAKFNGIKNG
CEEEEEECCCCCEEEEEEEECCCCCEEEECCHHHHHCCCCCCC
>Mature Secondary Structure
MVKHSKGYRTRTRKLLTKNVRERGAVPRLSLLMEEFKEGDYVVIKINPSVHKGMPHRRYH
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCC
GKVGVIQGKRGKAYIVRVTLGDKEKVIIVRPEHLAKFNGIKNG
CEEEEEECCCCCEEEEEEEECCCCCEEEECCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479