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The map label for this gene is ychF [C]

Identifier: 15920663

GI number: 15920663

Start: 455176

End: 456378

Strand: Direct

Name: ychF [C]

Synonym: ST0451

Alternate gene names: 15920663

Gene position: 455176-456378 (Clockwise)

Preceding gene: 15920649

Following gene: 15920672

Centisome position: 16.89

GC content: 32.92

Gene sequence:

>1203_bases
ATGATAACTATTGGTTTAATTGGAAAAACCAATGTAGGTAAAAGCACATTTTTCTCTGCAGCTACATTAATAGACGTACC
TATTGCAAATAGACCATTTGTAACTATAGAGCCAAATGTAGGAATAGCATATGTAAAGAAGAAATGTGTTCATGTAGAGT
TTGGCGTAAAATGTAATCCTAAAAATTCTATATGTATAGGAGATTATAGGTTTATTCCAGTAAAACTGGTTGATGTAGCT
GGTTTAATTCCTGGTGCACATGAAGGAAGAGGGCTTGGAAATAAATTTCTAGATGATTTAAGGAAAGCTGATGTTTTGAT
TCATGTAATAGATGCTAGTGGTTCTACTAATGAAGAAGGAATACCTGTAGCACCTGGCTCAAGAGACCCAGAAGAAGATA
TATCTTTTATAGAGAAGGAAATTGAAGAATGGTTCTATTCAATTATAAGTAAAGATTGGCAGAAGTTTGCAAGGACGGTA
GATCTTTCAAATAAAGATCCAATAGACGAATTATTATCAAAACTCTCTGGATTATCTATTAATAAATATCATATAATAGA
AACATTAAGGGAAACTAAACTAGAAAATTTAAAATTAATGCAATGGAGTGAAGAAGATTTAAGAAACTTTGCGAGAAAGT
TAAGAGAAATATCAAAGCCCATAGTTATAGCGGCTAATAAGGCCGATATTCCAGAATCAAGAAAATTTATCGAGAAGTTA
AAGCGAAAATATAATTATGTTATTCCTACTAGTGCTGAGGCAGAACTAGCTCTCAGAAAAGCAAGTAAAGCAGGAATTAT
AGAATATATTCCAGGAGAGAAAGATTTTAAGATATTAAAGGAGTTAAATCCTAAACAGAAAGAAGCATTGGATTATATAA
AGAAAAATGTACTAGAAATTTACGGAAGCACGGGTGTTCAAGAAGCACTAAATACGGCTGTATTTGGTGCTTTATCTATG
ATAGTCGTATACCCCGTGGAAGATGAAAAGAAGTTAACCGATCATAATGGTAATATATTACCCGATGCAATCTTAATAAA
GAAAGGATCTTCGCCCAAGGACTTGGCAAGTGTTATTCATTCTGAATTGGCCAAAGGTTTTCTCTTTGCGATAAACGTTA
AAAAGAAAGTAAGAGTAGGTGAGGAATATCAATTACAAGATGGGGATGTAATAAAAATAGTGTCATCAACTGCTAGACCT
TGA

Upstream 100 bases:

>100_bases
CCATGTTTGTTCTATATAATTATACATAGATGATGTCATTATTCTCCTAATGTTAAAATGAGCAACTACTTAATAAATGT
GTTTCTCCACATTATCATGA

Downstream 100 bases:

>100_bases
AAAACTCACCATAGCCGACATCTCTGTTTACAACCGCACCAGGATATATTCTAGCATAAGCACCAATTTTTACGCCAGGC
AATATGGTAACGTTTATTCC

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MITIGLIGKTNVGKSTFFSAATLIDVPIANRPFVTIEPNVGIAYVKKKCVHVEFGVKCNPKNSICIGDYRFIPVKLVDVA
GLIPGAHEGRGLGNKFLDDLRKADVLIHVIDASGSTNEEGIPVAPGSRDPEEDISFIEKEIEEWFYSIISKDWQKFARTV
DLSNKDPIDELLSKLSGLSINKYHIIETLRETKLENLKLMQWSEEDLRNFARKLREISKPIVIAANKADIPESRKFIEKL
KRKYNYVIPTSAEAELALRKASKAGIIEYIPGEKDFKILKELNPKQKEALDYIKKNVLEIYGSTGVQEALNTAVFGALSM
IVVYPVEDEKKLTDHNGNILPDAILIKKGSSPKDLASVIHSELAKGFLFAINVKKKVRVGEEYQLQDGDVIKIVSSTARP

Sequences:

>Translated_400_residues
MITIGLIGKTNVGKSTFFSAATLIDVPIANRPFVTIEPNVGIAYVKKKCVHVEFGVKCNPKNSICIGDYRFIPVKLVDVA
GLIPGAHEGRGLGNKFLDDLRKADVLIHVIDASGSTNEEGIPVAPGSRDPEEDISFIEKEIEEWFYSIISKDWQKFARTV
DLSNKDPIDELLSKLSGLSINKYHIIETLRETKLENLKLMQWSEEDLRNFARKLREISKPIVIAANKADIPESRKFIEKL
KRKYNYVIPTSAEAELALRKASKAGIIEYIPGEKDFKILKELNPKQKEALDYIKKNVLEIYGSTGVQEALNTAVFGALSM
IVVYPVEDEKKLTDHNGNILPDAILIKKGSSPKDLASVIHSELAKGFLFAINVKKKVRVGEEYQLQDGDVIKIVSSTARP
>Mature_400_residues
MITIGLIGKTNVGKSTFFSAATLIDVPIANRPFVTIEPNVGIAYVKKKCVHVEFGVKCNPKNSICIGDYRFIPVKLVDVA
GLIPGAHEGRGLGNKFLDDLRKADVLIHVIDASGSTNEEGIPVAPGSRDPEEDISFIEKEIEEWFYSIISKDWQKFARTV
DLSNKDPIDELLSKLSGLSINKYHIIETLRETKLENLKLMQWSEEDLRNFARKLREISKPIVIAANKADIPESRKFIEKL
KRKYNYVIPTSAEAELALRKASKAGIIEYIPGEKDFKILKELNPKQKEALDYIKKNVLEIYGSTGVQEALNTAVFGALSM
IVVYPVEDEKKLTDHNGNILPDAILIKKGSSPKDLASVIHSELAKGFLFAINVKKKVRVGEEYQLQDGDVIKIVSSTARP

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=427, Percent_Identity=27.1662763466042, Blast_Score=89, Evalue=9e-18,
Organism=Escherichia coli, GI1787454, Length=140, Percent_Identity=35, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789574, Length=238, Percent_Identity=27.7310924369748, Blast_Score=66, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17509631, Length=426, Percent_Identity=25.8215962441315, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17552324, Length=209, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321649, Length=398, Percent_Identity=35.678391959799, Blast_Score=206, Evalue=6e-54,
Organism=Saccharomyces cerevisiae, GI6321773, Length=425, Percent_Identity=25.6470588235294, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24640873, Length=416, Percent_Identity=27.4038461538462, Blast_Score=88, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24640877, Length=416, Percent_Identity=27.4038461538462, Blast_Score=88, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24640875, Length=416, Percent_Identity=27.4038461538462, Blast_Score=88, Evalue=9e-18,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 44575; Mature: 44575

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIGLIGKTNVGKSTFFSAATLIDVPIANRPFVTIEPNVGIAYVKKKCVHVEFGVKCNP
CEEEEEECCCCCCCHHHHHHHHEEECCCCCCCEEEECCCCCHHEEHHEEEEEEECCEECC
KNSICIGDYRFIPVKLVDVAGLIPGAHEGRGLGNKFLDDLRKADVLIHVIDASGSTNEEG
CCCEEECCEEEEEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCC
IPVAPGSRDPEEDISFIEKEIEEWFYSIISKDWQKFARTVDLSNKDPIDELLSKLSGLSI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC
NKYHIIETLRETKLENLKLMQWSEEDLRNFARKLREISKPIVIAANKADIPESRKFIEKL
CHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
KRKYNYVIPTSAEAELALRKASKAGIIEYIPGEKDFKILKELNPKQKEALDYIKKNVLEI
HHHCCEECCCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
YGSTGVQEALNTAVFGALSMIVVYPVEDEKKLTDHNGNILPDAILIKKGSSPKDLASVIH
HCCCCHHHHHHHHHHHHHHEEEEEECCCCCHHHCCCCCCCCCEEEEECCCCHHHHHHHHH
SELAKGFLFAINVKKKVRVGEEYQLQDGDVIKIVSSTARP
HHHHCCEEEEEECHHHHCCCCCEECCCCCEEEEECCCCCC
>Mature Secondary Structure
MITIGLIGKTNVGKSTFFSAATLIDVPIANRPFVTIEPNVGIAYVKKKCVHVEFGVKCNP
CEEEEEECCCCCCCHHHHHHHHEEECCCCCCCEEEECCCCCHHEEHHEEEEEEECCEECC
KNSICIGDYRFIPVKLVDVAGLIPGAHEGRGLGNKFLDDLRKADVLIHVIDASGSTNEEG
CCCEEECCEEEEEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCC
IPVAPGSRDPEEDISFIEKEIEEWFYSIISKDWQKFARTVDLSNKDPIDELLSKLSGLSI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC
NKYHIIETLRETKLENLKLMQWSEEDLRNFARKLREISKPIVIAANKADIPESRKFIEKL
CHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
KRKYNYVIPTSAEAELALRKASKAGIIEYIPGEKDFKILKELNPKQKEALDYIKKNVLEI
HHHCCEECCCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
YGSTGVQEALNTAVFGALSMIVVYPVEDEKKLTDHNGNILPDAILIKKGSSPKDLASVIH
HCCCCHHHHHHHHHHHHHHEEEEEECCCCCHHHCCCCCCCCCEEEEECCCCHHHHHHHHH
SELAKGFLFAINVKKKVRVGEEYQLQDGDVIKIVSSTARP
HHHHCCEEEEEECHHHHCCCCCEECCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]