Click here to switch to the map view.

The map label for this gene is rpl18p

Identifier: 15920623

GI number: 15920623

Start: 426239

End: 426829

Strand: Reverse

Name: rpl18p

Synonym: ST0415

Alternate gene names: 15920623

Gene position: 426829-426239 (Counterclockwise)

Preceding gene: 15920624

Following gene: 15920622

Centisome position: 15.84

GC content: 35.03

Gene sequence:

>591_bases
ATGGCACATGGTCCTAATTATAGAGTAAAGTATAGGAGAAGAAGAGAAGGAAAAACTAATTATTATAAGAGATATACATA
TGTTATAAACAACACCACAAGGTTAGTAGTAAGATTAACGAACAAATACATAATAGCACAAATTGCTAAGTTTAATCCAA
AAGGAGATGTTATTGTAGTAGCAGCACATTCTATGGAGCTTGCTAAGAAATTTGGCTGGAAAGGAGATCTGAACAACACA
CCTGCTGCCTATTTAACTGGATACTTATTAGGTGTTAGGGCCTTAAAGGCTGGTATAAAAGAAGCTGTGGCTGACATTGG
ACTTTTCGTGCCTGTAAAAGGTAGTAGGATATTTACAGCTATTAAAGGGGCTATTGACGCTGGTCTCAGCATCCCAGTAG
GAGATCTGGGTATAAAAGAGGATAGAATAAAAGGAGTTCATATAGCATCTTATGCCCAGAAATTAGAAGCTGAAAATCCT
GAATTATTCAAGAGATTATTTTCTAAGTATTTAGAAAGGGGATTGCATCCTAAAGATCTTCCTTCACACTTTGAAGAAAT
ATTAAATAAAATTAAATCTGGTGGAGCATAA

Upstream 100 bases:

>100_bases
ATATAGATTAGCATATAGAAAAGCTAAAGGAAACTCTTTTAGGAATCTCTCTGATGTAAAAAATTATCTTAAACAATTAG
GCGTGAAGGTGGAGTGAAAT

Downstream 100 bases:

>100_bases
TGGCAGAAGAGGTTCCTGTAATTAACCCAGAAGAATGGAAACCTAGAACAAAAGTAGGTCAGTTAGTTAAAGAAGGAAAA
ATAACATCTATGAAAGAAAT

Product: 50S ribosomal protein L18P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MAHGPNYRVKYRRRREGKTNYYKRYTYVINNTTRLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNT
PAAYLTGYLLGVRALKAGIKEAVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVGDLGIKEDRIKGVHIASYAQKLEAENP
ELFKRLFSKYLERGLHPKDLPSHFEEILNKIKSGGA

Sequences:

>Translated_196_residues
MAHGPNYRVKYRRRREGKTNYYKRYTYVINNTTRLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNT
PAAYLTGYLLGVRALKAGIKEAVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVGDLGIKEDRIKGVHIASYAQKLEAENP
ELFKRLFSKYLERGLHPKDLPSHFEEILNKIKSGGA
>Mature_195_residues
AHGPNYRVKYRRRREGKTNYYKRYTYVINNTTRLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTP
AAYLTGYLLGVRALKAGIKEAVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVGDLGIKEDRIKGVHIASYAQKLEAENPE
LFKRLFSKYLERGLHPKDLPSHFEEILNKIKSGGA

Specific function: This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance

COG id: COG0256

COG function: function code J; Ribosomal protein L18

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18P family

Homologues:

Organism=Homo sapiens, GI14591909, Length=237, Percent_Identity=32.9113924050633, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17534333, Length=239, Percent_Identity=35.5648535564854, Blast_Score=122, Evalue=9e-29,
Organism=Saccharomyces cerevisiae, GI6325126, Length=218, Percent_Identity=34.4036697247706, Blast_Score=100, Evalue=2e-22,
Organism=Drosophila melanogaster, GI116007384, Length=235, Percent_Identity=36.5957446808511, Blast_Score=122, Evalue=1e-28,
Organism=Drosophila melanogaster, GI116007382, Length=235, Percent_Identity=36.5957446808511, Blast_Score=122, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL18_SULTO (Q975J9)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376292.1
- ProteinModelPortal:   Q975J9
- SMR:   Q975J9
- GeneID:   1458348
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST0415
- NMPDR:   fig|273063.1.peg.460
- HOGENOM:   HBG391676
- OMA:   SRVYAAL
- ProtClustDB:   PRK08569
- BioCyc:   STOK273063:ST0415-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01337_A
- InterPro:   IPR005484
- InterPro:   IPR005485
- PANTHER:   PTHR23410

Pfam domain/function: PF00861 Ribosomal_L18p

EC number: NA

Molecular weight: Translated: 21903; Mature: 21772

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHGPNYRVKYRRRREGKTNYYKRYTYVINNTTRLVVRLTNKYIIAQIAKFNPKGDVIVV
CCCCCCCEEEEHHHCCCCCCCEEEEEEEECCCEEEEEEECCHHHHHHHHHCCCCCCEEEE
AAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALKAGIKEAVADIGLFVPVKGSRIFTA
EECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHH
IKGAIDAGLSIPVGDLGIKEDRIKGVHIASYAQKLEAENPELFKRLFSKYLERGLHPKDL
HHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
PSHFEEILNKIKSGGA
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AHGPNYRVKYRRRREGKTNYYKRYTYVINNTTRLVVRLTNKYIIAQIAKFNPKGDVIVV
CCCCCCEEEEHHHCCCCCCCEEEEEEEECCCEEEEEEECCHHHHHHHHHCCCCCCEEEE
AAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALKAGIKEAVADIGLFVPVKGSRIFTA
EECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHH
IKGAIDAGLSIPVGDLGIKEDRIKGVHIASYAQKLEAENPELFKRLFSKYLERGLHPKDL
HHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
PSHFEEILNKIKSGGA
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479