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The map label for this gene is rps28e [H]

Identifier: 15920472

GI number: 15920472

Start: 299438

End: 299689

Strand: Direct

Name: rps28e [H]

Synonym: STS040

Alternate gene names: 15920472

Gene position: 299438-299689 (Clockwise)

Preceding gene: 15920469

Following gene: 15920473

Centisome position: 11.11

GC content: 34.92

Gene sequence:

>252_bases
ATGAGCGAAAAAGAAAAATCACAAGCTCAGTCTTCGGTAATTGAAGAATTTGGATTCCCAGCTGAAGTAATACAAATTCT
AGATAGAACTGGTGTTACTGGTGAAGTAACTCAGGTTAGAGTCAGAGTTTTAGAAGGAAGAGATAAAGGAAGAATTTTAA
CCAGAAATGTAAAGGGCCCAGTAAGATTAGGTGATATTTTAATACTTAGAGAAACAGAGAGAGAAGCAAGAAAATTGACA
ACAAAGAGGTAA

Upstream 100 bases:

>100_bases
TCCACAGAAACTGCACTGTTTAATTGAGGGCATCTCATGATAATACAGAGAGTGAAGTATTTAAGTGAATTGGTTTTTTG
ATTACTAAGGGAATAAGAAA

Downstream 100 bases:

>100_bases
ATATATGCCTCTTTTTGTATTATCTAAACCAATTACATTACATTTTTTAACTCAGTTAAGATCTAAAAATACAGATCAGA
TTACTTTTAGGAAGACTTTA

Product: 30S ribosomal protein S28e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MSEKEKSQAQSSVIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRLGDILILRETEREARKLT
TKR

Sequences:

>Translated_83_residues
MSEKEKSQAQSSVIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRLGDILILRETEREARKLT
TKR
>Mature_82_residues
SEKEKSQAQSSVIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRLGDILILRETEREARKLTT
KR

Specific function: Unknown

COG id: COG2053

COG function: function code J; Ribosomal protein S28E/S33

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S28e family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323294, Length=59, Percent_Identity=62.7118644067797, Blast_Score=65, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324741, Length=59, Percent_Identity=62.7118644067797, Blast_Score=65, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24651257, Length=59, Percent_Identity=62.7118644067797, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000289
- InterPro:   IPR022836
- ProDom:   PD005541 [H]

Pfam domain/function: PF01200 Ribosomal_S28e [H]

EC number: NA

Molecular weight: Translated: 9420; Mature: 9289

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS00961 RIBOSOMAL_S28E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKEKSQAQSSVIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGP
CCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
VRLGDILILRETEREARKLTTKR
EEECCEEEEECCHHHHHHCCCCC
>Mature Secondary Structure 
SEKEKSQAQSSVIEEFGFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGP
CCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
VRLGDILILRETEREARKLTTKR
EEECCEEEEECCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA