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The map label for this gene is soxA [H]

Identifier: 15920313

GI number: 15920313

Start: 154680

End: 155198

Strand: Direct

Name: soxA [H]

Synonym: ST0135

Alternate gene names: 15920313

Gene position: 154680-155198 (Clockwise)

Preceding gene: 15920307

Following gene: 15920314

Centisome position: 5.74

GC content: 36.22

Gene sequence:

>519_bases
ATGATTATAATGAGCTTTATCAAAGAACATGCAGAGTTAGTATGGTTTGTAGTGATGTTAACGTTAGTAGCAATTTTTAG
TGGATGGAACATATATGGAGTTACACATGGAACAAGCACAAGTTACAGATATGGACTACCATGTTTTTCTGGTTTACCAA
AACAAGCACAACAGGCAGTATTATATTTCAACTCTCATCCTCCATCCGGTCAATCATATGAAGTTGTTAACGGGATATTA
GTAGTTAATATGACAATAACCCAGCAAAACGGATTCCAACCAGACTTAATAATAGCAAATACAAGCGAACCGGTAGTTAT
AATTTTAAATTCACCTCAAGTAATAACAGGTTTCTACTTAAGACTCCCAGATGGTGTTGTGCAAGTTAATGCAGTTCCTG
GAACTCCAAGTTACATATATTTCGTAACACCCCCGACTCCAGGTAATTTCACTTGGAGGGATTCGGAATATTCCGCATAT
AATTTCTCTTATTTCACTGGAACATTAGAGGTGATGTAA

Upstream 100 bases:

>100_bases
TAGCTTTAGTAAATTATACTACACTACTTTTTAATGAAAATATTGCAAACTTGATTGTTATTAAAAATAATGTTTTTAAA
CTCTATTAACTATTATAGTC

Downstream 100 bases:

>100_bases
AAAATGAATATTTGGGAAATTTTGGATAGAATTACAATTTCACTCGTTGAATTTATAAACAAAGCAAAAAAAGTAGTAAA
CCCGAAAGATACTGTAGGTT

Product: quinol oxidase polypeptide II

Products: NA

Alternate protein names: Cytochrome aa3 subunit 2; Oxidase aa(3) subunit 2; Quinol oxidase polypeptide II [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MIIMSFIKEHAELVWFVVMLTLVAIFSGWNIYGVTHGTSTSYRYGLPCFSGLPKQAQQAVLYFNSHPPSGQSYEVVNGIL
VVNMTITQQNGFQPDLIIANTSEPVVIILNSPQVITGFYLRLPDGVVQVNAVPGTPSYIYFVTPPTPGNFTWRDSEYSAY
NFSYFTGTLEVM

Sequences:

>Translated_172_residues
MIIMSFIKEHAELVWFVVMLTLVAIFSGWNIYGVTHGTSTSYRYGLPCFSGLPKQAQQAVLYFNSHPPSGQSYEVVNGIL
VVNMTITQQNGFQPDLIIANTSEPVVIILNSPQVITGFYLRLPDGVVQVNAVPGTPSYIYFVTPPTPGNFTWRDSEYSAY
NFSYFTGTLEVM
>Mature_172_residues
MIIMSFIKEHAELVWFVVMLTLVAIFSGWNIYGVTHGTSTSYRYGLPCFSGLPKQAQQAVLYFNSHPPSGQSYEVVNGIL
VVNMTITQQNGFQPDLIIANTSEPVVIILNSPQVITGFYLRLPDGVVQVNAVPGTPSYIYFVTPPTPGNFTWRDSEYSAY
NFSYFTGTLEVM

Specific function: Subunit 2 transfers the electrons from caldariella quinol to the bimetallic center of the catalytic subunit 1 that is formed by heme A3 and Cu(B) [H]

COG id: COG1622

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase subunit 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR002429 [H]

Pfam domain/function: PF00116 COX2 [H]

EC number: 1.9.3.-

Molecular weight: Translated: 19149; Mature: 19149

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIMSFIKEHAELVWFVVMLTLVAIFSGWNIYGVTHGTSTSYRYGLPCFSGLPKQAQQAV
CEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCHHCCCCCCCCEEE
LYFNSHPPSGQSYEVVNGILVVNMTITQQNGFQPDLIIANTSEPVVIILNSPQVITGFYL
EEECCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCEEEEECCCCEEEEECCCCEEEEEEE
RLPDGVVQVNAVPGTPSYIYFVTPPTPGNFTWRDSEYSAYNFSYFTGTLEVM
ECCCCEEEEEECCCCCCEEEEECCCCCCCCEEECCCCCEEEEEEEEEEEEEC
>Mature Secondary Structure
MIIMSFIKEHAELVWFVVMLTLVAIFSGWNIYGVTHGTSTSYRYGLPCFSGLPKQAQQAV
CEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCHHCCCCCCCCEEE
LYFNSHPPSGQSYEVVNGILVVNMTITQQNGFQPDLIIANTSEPVVIILNSPQVITGFYL
EEECCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCEEEEECCCCEEEEECCCCEEEEEEE
RLPDGVVQVNAVPGTPSYIYFVTPPTPGNFTWRDSEYSAYNFSYFTGTLEVM
ECCCCEEEEEECCCCCCEEEEECCCCCCCCEEECCCCCEEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1372250 [H]