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The map label for this gene is ygcB [C]

Identifier: 15920205

GI number: 15920205

Start: 45312

End: 46946

Strand: Direct

Name: ygcB [C]

Synonym: ST0032

Alternate gene names: 15920205

Gene position: 45312-46946 (Clockwise)

Preceding gene: 15920204

Following gene: 15920206

Centisome position: 1.68

GC content: 33.33

Gene sequence:

>1635_bases
ATGGATTGTAAAGATGTAGGAGAAAATGTAAAGGGAAAGAAGCTTGCAGAGTGCAATGATGTTAATTTTATTCTTAATTT
TCCAACGGGCTATGGGAAAACCACTTTATCCATAACTCTTGGTGAGTGGTTAACCACATATACTACAACTAATTTTTATA
GATTAATACATGTAGTTCCTACACGAGCTTTAGTTGAGGACATCTCTAAGAGGGCTGAGGGATTAAAATATGCAGTCCAG
TACTCTTTTGCACCTTCAGAACTTAAGTCCCCTAATTTTCTGGCTGATTTTATCATAACTACTTATGACTCTTTTTTCTT
AAATTTGTATAAGGCAAGCATAGGTGAACCTTTTTCGGATCACGGTCATTACGACTTACCTAGGTTTTCGATTTATACCT
CTTTAGTCCACTTTGATGAGTTTCATTTGATGAACGAGAGTAACAGTTGGACCTCGCTTATAGGTGCTGTTGAGCATCTC
TCGAAATTAGGGGTAAACTTCATAATGTCGTCTGCAACCCCAAGCAAAAGTGTTGAAGAAAAGATTATTGATCATTCGAA
AAACGTAATTAAGGTATCGGTGGTAAACGAATACGGTAATGCTATAAATGGAAGAAAGTGCACAGAAGTGGATAACGGAA
TTTATGAGTGCGAGACTACAAAAGGAAGAAAGAGATATAAAGTAGTTGAAATAAAGGAAAAAATTGATGTTCCTAATATT
GATGTTAAAATAGTTAACAACATAGAGCAATTTTACAATATTGTAAAAGACTCGGAGAAGGCTATAATCGTAGTTAATAC
TGTTGATAAGGCTATATTACTTTACGATAAGCTTAAACACTTAAAGCCTTGTCTAATCCACTCTAGATTCAAGATCTCGG
ATAGACAGAAGAGAAAACTTGATGACTGCAAACTAATCGTATCCACTCAAGTTATTGAAGTAGGTGTTAACATTTCTTCA
GAAATTATGATAACTGAACAAGCACCTCTTACTTCAATAGTCCAGAGAGTCGGAAGACTATTGAGATATAATGAGAAAAA
CGAAGGAACTCTTTATATATGGAAAAGTAACGAGACTTATCCTTACGACGAAAATGAGGTTATAAAGACTGTTGAAGCTC
TAAGTAACAACGATATATGTCTTAAACATCCTTATGGGTGTCATAATAAAAAAGGATATGCCGAAATAATTGATAGTATA
ATAAGTGAGCCTAACATTAATCAAAAACTTCTTAACGATCTAGAAAAAATAAGTATAAACCCTTTCTTATCGAAGAAGGA
TCTTGATATAATTCTAGAGAAATATTGCACTCTTACTAATTCCTTTATAGTAAACCTCGCTATAGATAAACCCAGTAGAA
TGGAGGATTTAATACCTTTTAATGGTAAGATGATAGATAATGCTCCTCTTATAAGGAAGGACAACAAAATTGTTGCATAT
TTTGAAAAATATACTCCTACTAACGTTATAGACAAAGTAGAAGTAATAGAGGATTATATAGAGTTCAAGGACTGGAAAGA
TCTATGTATAAAATACAGAAAGATCTTCATGAAAGGAGAAGAAAAAATGATATTACTTGCACTTAAGGCGGATAGTAGTT
ATTATGATAGTGAGAGGGGATTGAGGTTAAAATGA

Upstream 100 bases:

>100_bases
AAATGGTAAGGACTATAAAGGAAGCTGTAATTTTAGAAAGGCAGAAGCAGAAGGGAGGATACTCCGCTTGAGAGAGGGAA
TTAGGAAAGTTCTTGAGCTT

Downstream 100 bases:

>100_bases
CATGCTGGGCATTTTATGGTAAAGAGACTTTTAAAGATCATGCATTGGGAACTTTAAATTGCTTCAGAAACAACTTTGAG
TATATAATTCCTATTTTATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MDCKDVGENVKGKKLAECNDVNFILNFPTGYGKTTLSITLGEWLTTYTTTNFYRLIHVVPTRALVEDISKRAEGLKYAVQ
YSFAPSELKSPNFLADFIITTYDSFFLNLYKASIGEPFSDHGHYDLPRFSIYTSLVHFDEFHLMNESNSWTSLIGAVEHL
SKLGVNFIMSSATPSKSVEEKIIDHSKNVIKVSVVNEYGNAINGRKCTEVDNGIYECETTKGRKRYKVVEIKEKIDVPNI
DVKIVNNIEQFYNIVKDSEKAIIVVNTVDKAILLYDKLKHLKPCLIHSRFKISDRQKRKLDDCKLIVSTQVIEVGVNISS
EIMITEQAPLTSIVQRVGRLLRYNEKNEGTLYIWKSNETYPYDENEVIKTVEALSNNDICLKHPYGCHNKKGYAEIIDSI
ISEPNINQKLLNDLEKISINPFLSKKDLDIILEKYCTLTNSFIVNLAIDKPSRMEDLIPFNGKMIDNAPLIRKDNKIVAY
FEKYTPTNVIDKVEVIEDYIEFKDWKDLCIKYRKIFMKGEEKMILLALKADSSYYDSERGLRLK

Sequences:

>Translated_544_residues
MDCKDVGENVKGKKLAECNDVNFILNFPTGYGKTTLSITLGEWLTTYTTTNFYRLIHVVPTRALVEDISKRAEGLKYAVQ
YSFAPSELKSPNFLADFIITTYDSFFLNLYKASIGEPFSDHGHYDLPRFSIYTSLVHFDEFHLMNESNSWTSLIGAVEHL
SKLGVNFIMSSATPSKSVEEKIIDHSKNVIKVSVVNEYGNAINGRKCTEVDNGIYECETTKGRKRYKVVEIKEKIDVPNI
DVKIVNNIEQFYNIVKDSEKAIIVVNTVDKAILLYDKLKHLKPCLIHSRFKISDRQKRKLDDCKLIVSTQVIEVGVNISS
EIMITEQAPLTSIVQRVGRLLRYNEKNEGTLYIWKSNETYPYDENEVIKTVEALSNNDICLKHPYGCHNKKGYAEIIDSI
ISEPNINQKLLNDLEKISINPFLSKKDLDIILEKYCTLTNSFIVNLAIDKPSRMEDLIPFNGKMIDNAPLIRKDNKIVAY
FEKYTPTNVIDKVEVIEDYIEFKDWKDLCIKYRKIFMKGEEKMILLALKADSSYYDSERGLRLK
>Mature_544_residues
MDCKDVGENVKGKKLAECNDVNFILNFPTGYGKTTLSITLGEWLTTYTTTNFYRLIHVVPTRALVEDISKRAEGLKYAVQ
YSFAPSELKSPNFLADFIITTYDSFFLNLYKASIGEPFSDHGHYDLPRFSIYTSLVHFDEFHLMNESNSWTSLIGAVEHL
SKLGVNFIMSSATPSKSVEEKIIDHSKNVIKVSVVNEYGNAINGRKCTEVDNGIYECETTKGRKRYKVVEIKEKIDVPNI
DVKIVNNIEQFYNIVKDSEKAIIVVNTVDKAILLYDKLKHLKPCLIHSRFKISDRQKRKLDDCKLIVSTQVIEVGVNISS
EIMITEQAPLTSIVQRVGRLLRYNEKNEGTLYIWKSNETYPYDENEVIKTVEALSNNDICLKHPYGCHNKKGYAEIIDSI
ISEPNINQKLLNDLEKISINPFLSKKDLDIILEKYCTLTNSFIVNLAIDKPSRMEDLIPFNGKMIDNAPLIRKDNKIVAY
FEKYTPTNVIDKVEVIEDYIEFKDWKDLCIKYRKIFMKGEEKMILLALKADSSYYDSERGLRLK

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 62482; Mature: 62482

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCKDVGENVKGKKLAECNDVNFILNFPTGYGKTTLSITLGEWLTTYTTTNFYRLIHVVP
CCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHEEEEHHHH
TRALVEDISKRAEGLKYAVQYSFAPSELKSPNFLADFIITTYDSFFLNLYKASIGEPFSD
HHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HGHYDLPRFSIYTSLVHFDEFHLMNESNSWTSLIGAVEHLSKLGVNFIMSSATPSKSVEE
CCCCCCCHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCHHHEEECCCCCHHHHH
KIIDHSKNVIKVSVVNEYGNAINGRKCTEVDNGIYECETTKGRKRYKVVEIKEKIDVPNI
HHHHCCCCEEEEEEEEHHCCCCCCCCCCHHCCCEEEEECCCCCCEEEEEEEHHHCCCCCC
DVKIVNNIEQFYNIVKDSEKAIIVVNTVDKAILLYDKLKHLKPCLIHSRFKISDRQKRKL
CEEEHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHCCCCCCCHHHHCC
DDCKLIVSTQVIEVGVNISSEIMITEQAPLTSIVQRVGRLLRYNEKNEGTLYIWKSNETY
CHHEEEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
PYDENEVIKTVEALSNNDICLKHPYGCHNKKGYAEIIDSIISEPNINQKLLNDLEKISIN
CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCC
PFLSKKDLDIILEKYCTLTNSFIVNLAIDKPSRMEDLIPFNGKMIDNAPLIRKDNKIVAY
CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHCCCCCCEEECCCCCEECCCCEEEE
FEKYTPTNVIDKVEVIEDYIEFKDWKDLCIKYRKIFMKGEEKMILLALKADSSYYDSERG
EECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
LRLK
CCCC
>Mature Secondary Structure
MDCKDVGENVKGKKLAECNDVNFILNFPTGYGKTTLSITLGEWLTTYTTTNFYRLIHVVP
CCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHEEEEHHHH
TRALVEDISKRAEGLKYAVQYSFAPSELKSPNFLADFIITTYDSFFLNLYKASIGEPFSD
HHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HGHYDLPRFSIYTSLVHFDEFHLMNESNSWTSLIGAVEHLSKLGVNFIMSSATPSKSVEE
CCCCCCCHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCHHHEEECCCCCHHHHH
KIIDHSKNVIKVSVVNEYGNAINGRKCTEVDNGIYECETTKGRKRYKVVEIKEKIDVPNI
HHHHCCCCEEEEEEEEHHCCCCCCCCCCHHCCCEEEEECCCCCCEEEEEEEHHHCCCCCC
DVKIVNNIEQFYNIVKDSEKAIIVVNTVDKAILLYDKLKHLKPCLIHSRFKISDRQKRKL
CEEEHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHCCCCCCCHHHHCC
DDCKLIVSTQVIEVGVNISSEIMITEQAPLTSIVQRVGRLLRYNEKNEGTLYIWKSNETY
CHHEEEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
PYDENEVIKTVEALSNNDICLKHPYGCHNKKGYAEIIDSIISEPNINQKLLNDLEKISIN
CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCC
PFLSKKDLDIILEKYCTLTNSFIVNLAIDKPSRMEDLIPFNGKMIDNAPLIRKDNKIVAY
CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHCCCCCCEEECCCCCEECCCCEEEE
FEKYTPTNVIDKVEVIEDYIEFKDWKDLCIKYRKIFMKGEEKMILLALKADSSYYDSERG
EECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
LRLK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]