| Definition | Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence. |
|---|---|
| Accession | NC_003065 |
| Length | 214,233 |
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The map label for this gene is accb [H]
Identifier: 159161985
GI number: 159161985
Start: 159963
End: 160862
Strand: Direct
Name: accb [H]
Synonym: Atu6140
Alternate gene names: 159161985
Gene position: 159963-160862 (Clockwise)
Preceding gene: 16119957
Following gene: 16119959
Centisome position: 74.67
GC content: 59.11
Gene sequence:
>900_bases GTGCCGGCGCGCGATATCACAATCATCAACGGTGTCAGTTTTTCACTGGATGCAGGGCAGACGCTTGGACTCGTCGGGGA GTCGGGCTGCGGAAAGAGCATGACATGTTACGCAATAGCCAAGGCATTGCCGCGAGGGATTTCGCAGACGGGCGGAACTA TTGAGCTGGACAGTGGACCAAAGGCTGATGGCAAGCCGGCTATTGCCATGATCTATCAGGACCCGACCAGCAGCCTCAAT CCGGTTCATTCGATCGGTTATTATCTCGAGAGCAGCCTTTATCGCCATCAGGGTCTGGAGGGCAACGATGCACGGCTCGA GGCCATGCGTCTTCTCGAACGTGTCGGTATCGACCGCGCCAAAAGTCGGCTGCGATCCTATCCTCATGAGTTCTCGGGCG GTATGAACCAGCGCGTCATGATTGCCCACGCGCTCGCTGCGAAGCCCAAGCTGATGATCGCCGACGAGCCCACGACAGCG CTCGATGTCACGACGCAGGCGCAGATCCTTCATCTTCTGGAGGAACTCAGATCTGAAACAGGCATGGCGCTTTTGATCGT GTCGCACGATCTCGGCGTGATCGCCCGCCTCGCGGATCGTGCGGCGGTCATGTATTGCGGAAAGATCGTCGAAACGGCGC CGGTTGCGGAATTGTTGGAGCGTGCAGCGCATCCTTACGCTCGCGCCCTGATCGGCTGCATGCCAACGATCGATGCGGAC GACCTGGAGCCGCCAGTACCAATCCCGGGTTCTGTTCCTCTTCTCGATAACCTGCCTGCCGGATGTTATTATCACCCACG CTGTCCCCGCGCGAGCGAACAATGTTCCGTGAGCTTTCCCGGGCCTGTCAACGTCGGCGCGTTCCATGACGCGGCCTGTT ACCATCCGGTGAGCCCATGA
Upstream 100 bases:
>100_bases AACTCGTTAATCGAGAAGGCGGCGCGCGCGAGATGTGCGCGTCGCCCTGGAGGAGCCTAAGTTGTCAAATCTACTAACAG TTCGCGACCTGATCGTTCAG
Downstream 100 bases:
>100_bases GTGCGCCTCTTCTTCAGGCCCGCGGGGTCACCAAGGTCTTTCGCCTGAAATCCGGGCTTTTCGTAAAGCCATCGGTACAT GTGGCGGTTAATTCAATTGA
Product: ABC transporter, nucleotide binding/ATPase protein (agrocinopine)
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MPARDITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGTIELDSGPKADGKPAIAMIYQDPTSSLN PVHSIGYYLESSLYRHQGLEGNDARLEAMRLLERVGIDRAKSRLRSYPHEFSGGMNQRVMIAHALAAKPKLMIADEPTTA LDVTTQAQILHLLEELRSETGMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLERAAHPYARALIGCMPTIDAD DLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFHDAACYHPVSP
Sequences:
>Translated_299_residues MPARDITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGTIELDSGPKADGKPAIAMIYQDPTSSLN PVHSIGYYLESSLYRHQGLEGNDARLEAMRLLERVGIDRAKSRLRSYPHEFSGGMNQRVMIAHALAAKPKLMIADEPTTA LDVTTQAQILHLLEELRSETGMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLERAAHPYARALIGCMPTIDAD DLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFHDAACYHPVSP >Mature_298_residues PARDITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGTIELDSGPKADGKPAIAMIYQDPTSSLNP VHSIGYYLESSLYRHQGLEGNDARLEAMRLLERVGIDRAKSRLRSYPHEFSGGMNQRVMIAHALAAKPKLMIADEPTTAL DVTTQAQILHLLEELRSETGMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLERAAHPYARALIGCMPTIDADD LEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFHDAACYHPVSP
Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=233, Percent_Identity=26.6094420600858, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI4505771, Length=232, Percent_Identity=26.2931034482759, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9961252, Length=232, Percent_Identity=26.2931034482759, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI42741659, Length=233, Percent_Identity=27.4678111587983, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI27436953, Length=217, Percent_Identity=26.2672811059908, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI171184400, Length=251, Percent_Identity=29.0836653386454, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27477115, Length=199, Percent_Identity=24.6231155778894, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI6005701, Length=199, Percent_Identity=24.6231155778894, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI89111135, Length=244, Percent_Identity=26.2295081967213, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI48994883, Length=305, Percent_Identity=43.6065573770492, Blast_Score=239, Evalue=2e-64, Organism=Escherichia coli, GI1789963, Length=298, Percent_Identity=39.5973154362416, Blast_Score=222, Evalue=2e-59, Organism=Escherichia coli, GI145693107, Length=255, Percent_Identity=43.921568627451, Blast_Score=205, Evalue=3e-54, Organism=Escherichia coli, GI1787759, Length=304, Percent_Identity=39.4736842105263, Blast_Score=204, Evalue=5e-54, Organism=Escherichia coli, GI1788506, Length=285, Percent_Identity=42.1052631578947, Blast_Score=203, Evalue=1e-53, Organism=Escherichia coli, GI1787548, Length=315, Percent_Identity=37.4603174603175, Blast_Score=195, Evalue=3e-51, Organism=Escherichia coli, GI1787500, Length=304, Percent_Identity=39.1447368421053, Blast_Score=190, Evalue=1e-49, Organism=Escherichia coli, GI1789962, Length=301, Percent_Identity=35.2159468438538, Blast_Score=187, Evalue=5e-49, Organism=Escherichia coli, GI1787758, Length=269, Percent_Identity=38.6617100371747, Blast_Score=179, Evalue=3e-46, Organism=Escherichia coli, GI1789890, Length=233, Percent_Identity=43.7768240343348, Blast_Score=169, Evalue=3e-43, Organism=Escherichia coli, GI1787547, Length=226, Percent_Identity=33.1858407079646, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI48994997, Length=232, Percent_Identity=37.9310344827586, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1789891, Length=220, Percent_Identity=35, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1786398, Length=263, Percent_Identity=30.0380228136882, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1787029, Length=209, Percent_Identity=31.5789473684211, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787712, Length=256, Percent_Identity=28.90625, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1789032, Length=234, Percent_Identity=28.6324786324786, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87081791, Length=317, Percent_Identity=24.9211356466877, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1786563, Length=226, Percent_Identity=31.858407079646, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786703, Length=219, Percent_Identity=34.2465753424658, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1787089, Length=200, Percent_Identity=34.5, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788225, Length=242, Percent_Identity=27.6859504132231, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1786872, Length=196, Percent_Identity=34.6938775510204, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1788450, Length=236, Percent_Identity=27.9661016949153, Blast_Score=88, Evalue=8e-19, Organism=Escherichia coli, GI1787105, Length=232, Percent_Identity=33.1896551724138, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1787112, Length=231, Percent_Identity=31.1688311688312, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789672, Length=224, Percent_Identity=30.3571428571429, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790162, Length=226, Percent_Identity=26.5486725663717, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787370, Length=247, Percent_Identity=26.3157894736842, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI87081834, Length=220, Percent_Identity=33.1818181818182, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1788761, Length=284, Percent_Identity=26.4084507042254, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788644, Length=123, Percent_Identity=36.5853658536585, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786253, Length=226, Percent_Identity=30.9734513274336, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1787164, Length=207, Percent_Identity=28.9855072463768, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786803, Length=229, Percent_Identity=29.6943231441048, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789873, Length=214, Percent_Identity=30.8411214953271, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789991, Length=220, Percent_Identity=29.5454545454545, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786345, Length=222, Percent_Identity=28.8288288288288, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787792, Length=209, Percent_Identity=29.6650717703349, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI87081709, Length=230, Percent_Identity=26.9565217391304, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87082267, Length=231, Percent_Identity=29.4372294372294, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790739, Length=218, Percent_Identity=28.4403669724771, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789593, Length=232, Percent_Identity=26.2931034482759, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786319, Length=230, Percent_Identity=25.2173913043478, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1790467, Length=258, Percent_Identity=25.1937984496124, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1788165, Length=197, Percent_Identity=28.9340101522843, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI48995001, Length=112, Percent_Identity=37.5, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI48994943, Length=256, Percent_Identity=24.21875, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1790525, Length=222, Percent_Identity=30.6306306306306, Blast_Score=68, Evalue=9e-13, Organism=Escherichia coli, GI1788053, Length=189, Percent_Identity=31.7460317460317, Blast_Score=68, Evalue=9e-13, Organism=Escherichia coli, GI1787143, Length=226, Percent_Identity=28.7610619469027, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790190, Length=260, Percent_Identity=26.5384615384615, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786698, Length=230, Percent_Identity=27.3913043478261, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788210, Length=215, Percent_Identity=30.2325581395349, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789586, Length=241, Percent_Identity=27.3858921161826, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17541710, Length=231, Percent_Identity=32.034632034632, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI193211017, Length=233, Percent_Identity=29.6137339055794, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193211015, Length=233, Percent_Identity=29.6137339055794, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17558664, Length=228, Percent_Identity=27.6315789473684, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71996809, Length=233, Percent_Identity=29.6137339055794, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17569143, Length=232, Percent_Identity=29.7413793103448, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17565938, Length=238, Percent_Identity=28.9915966386555, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI212646699, Length=233, Percent_Identity=28.3261802575107, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193209708, Length=229, Percent_Identity=30.5676855895196, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17569145, Length=222, Percent_Identity=28.8288288288288, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17511077, Length=259, Percent_Identity=27.4131274131274, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115535101, Length=233, Percent_Identity=25.7510729613734, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193208177, Length=219, Percent_Identity=27.8538812785388, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17567265, Length=197, Percent_Identity=30.4568527918782, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17543740, Length=238, Percent_Identity=26.0504201680672, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI85726357, Length=233, Percent_Identity=28.755364806867, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI17136662, Length=237, Percent_Identity=29.535864978903, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24641565, Length=225, Percent_Identity=30.2222222222222, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI281363262, Length=237, Percent_Identity=27.4261603375527, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24653245, Length=237, Percent_Identity=27.4261603375527, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24659289, Length=238, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 31939; Mature: 31808
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPARDITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGTIELDSGP CCCCCEEEEECCEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCC KADGKPAIAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLEGNDARLEAMRLLERVGIDRA CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHH KSRLRSYPHEFSGGMNQRVMIAHALAAKPKLMIADEPTTALDVTTQAQILHLLEELRSET HHHHHHCCHHHCCCCCCEEHEEHHHHCCCEEEEECCCCCEEECHHHHHHHHHHHHHHHCC GMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLERAAHPYARALIGCMPTIDAD CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC DLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFHDAACYHPVSP CCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PARDITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGTIELDSGP CCCCEEEEECCEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCC KADGKPAIAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLEGNDARLEAMRLLERVGIDRA CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHH KSRLRSYPHEFSGGMNQRVMIAHALAAKPKLMIADEPTTALDVTTQAQILHLLEELRSET HHHHHHCCHHHCCCCCCEEHEEHHHHCCCEEEEECCCCCEEECHHHHHHHHHHHHHHHCC GMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLERAAHPYARALIGCMPTIDAD CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC DLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFHDAACYHPVSP CCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7997159; 9384377 [H]