Definition Dinoroseobacter shibae DFL 12 chromosome, complete genome.
Accession NC_009952
Length 3,789,584

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Identifier: 159044516

GI number:

Start: 2081843

End: 2083909

Strand: Reverse

Name: Not Available

Synonym: Dshi_1970

Alternate gene names: NA

Gene position: NA

Preceding gene: 159044517

Following gene: 284928597

Centisome position: NA

GC content: NA

Gene sequence:

>2067_bases
ATGGCGGTGGACATCCCCCAGATCGAGGACCCGCTCGAAACCTACGAGCATATTCTCGAACACGAGGAGCGCGACAGGCA
GCCGGTGGCGGTGGCGCTGGACAATGCGGTAAAGGGCGTGGGCCATGTGGTGATGTGGGCCAATATCGCGCTCATTGCCG
CCATCGTGGCGCAGGTGCTGTTCCGCTACCTGCTGAACCAGAACTTCCCCAAGCTGGACGAGATCCAGTGGCATTTCTAC
GGCGCGGTGACGATGATCGGCATCTCCTACGCGCTGGTCACGGACAGCCATGTGCGGGTCGATCTCTTGCACATGCAACT
CAGCCGCCGGTCCCAGCGGATCATCGAGGTGCTGGGCATCCTGTTCCTGCTGGTGCCGCTGATCTACCTGATGGTGGACC
AGGGCTGGGATTATTTTTACGAGAGCTACCGGGTGAACGAGCGCTCCGACAGCCCCACGGGTCTGCCCCTGCGCTGGGCG
TTCAAGGCGATCATTCCCATCAGTTTCGTTTTGCTGGGCATCGCGGCAGTGGCGCGGTTGATCCATGATGCCCATGCGCT
CTGGGTCGGGTACGAGGATGAACGTCCGGGCCGCGGGCTGGGTGTGGTGCTGATGGCGCTGCTGGCCTTCGCGGTCGTGG
GCTTCGGTCTGAGTTTCCTGGTGGAGACGACGGAAGAGAAGCTGGTGGTGGCGATGTTCATCACCTTCATCGCGCTCTTG
TTCACCGGGTACCCGGTGGCCTGGGTGCTGTCGGGGGTGGGTGTGGCCTATTGCGGGCTCGCGTTCCTGTTCGACAACGA
CCTGATGCTGTGGACCGGGCTGGAAGGCACGCTCACGGGGCTGGATTACCTGACCCTGGGCGCCACGGTGAACCGGGTCT
ATGCGACCATGTCGAACGCGGTTCTGGTGGCCCTGCCGATGTTCATCTTCATGGGGCTGATGCTGGACGAGAGCGGGGTC
GCGGAGCGGCTGATGACCTCGATGCAGCGGCTTTTCGGCAAGACGCGCGGAGGGCTGGCGATCACGGTGACGATGATCGG
GATCATCCTTGCGGCCTCCACGGGGATCATCGGGGCATCCGTTGTGCTGCTGGGGGTTCTGTCCCTGCCGGCGATGATGC
AGCAGAAATACTCGCCGCGCCTGGCCGCGGGGGTCGTGTCGGCCTCGGGCACCCTGGGCATCCTCATTCCGCCGTCGATC
ATGCTGGTCATCATGGCGGACCAGATGGCGCTGTCGGTGGGCGATCTGTTCATGGCCGCGGTGTTCCCGGGGGTGATCAT
CGGGGGGCTCTACCTGGTCTATATCTTCGTGATCTCGTACCTGAAGCCCGACGTGGCCCCGGTGCCGGAGGGTGCGCAAT
CGCCCGATTGGCAGGCGGTCAAGGACGTGATGGTCGCGGTGCTGCCGACGCTGGGCCTGATCCTGGCGGTGTTGGGGTCG
ATTTTCGCAGGTATCTGCACGCCGACCGAAGCTTCGGGCATCGGCGCGCTGGGCGCGACCCTGCTGGCGCTGGGGTATCG
GAAGCTGACCCTGCACAAGCTGGTCAATGTGCTGGTGTCGACCTTCAACACCACCGCCTATATCTTCGCGATCTTCCTCG
GGGCGACGGTGTTCTCTTACGTCCTGCGCGAGCTGGGCGGGGACGCGTTGATCGAGCACATGATCGCGGCCACGGGGCTG
GGCCCCAACGGCACGATCCTGTTCATCCTGTTCATCGTGTTCCTGTTGGGCTTCGTTCTGGACTGGATCGAGATCACGCT
GATCGTGCTGCCGCTGATGCGGCCCATCGTGAACGCGCTGGGCATGGATATCCCCGGTTTCGGGGTGCTGGATGAGCCGA
CGCTGGTGTGGTTCGTCATTCTTGTCGCAGTCACCTTGCAGACATCATTCTTGACTCCGCCGGTCGGGTTTGCCCTGTTC
TATCTCAAGGGAGTTTGCCCGCCGGAGATCAAGCTGCTGGACATCTACAAGGGGATCATCCCGTTTGTCCTGCTGCAGCT
CACGGGGTTGGCGTTGGTGTTCCTGCTGCCTGCGCTCGCAACCTGGCTGCCGTCGGTGGCCTACTGA

Upstream 100 bases:

>100_bases
CATGTGGCGTCGCCCCTCCTGATTTCCTGATTTTTCAGACAGTTGCACAAATCCGGCTGGACAGATGCGTCCGCCATTCA
AGGACCAGAGGAGAGGAACG

Downstream 100 bases:

>100_bases
TGGAGGCTGGACGCATGACCGACGCAGATCTGATCGAAACCCTGCGCGGGATCGTCGGGGCCCGGCACCTGATGACCGAC
CCGCGCAAGACCGAGCGGTT

Product: TRAP dicarboxylate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>688_residues
MAVDIPQIEDPLETYEHILEHEERDRQPVAVALDNAVKGVGHVVMWANIALIAAIVAQVLFRYLLNQNFPKLDEIQWHFY
GAVTMIGISYALVTDSHVRVDLLHMQLSRRSQRIIEVLGILFLLVPLIYLMVDQGWDYFYESYRVNERSDSPTGLPLRWA
FKAIIPISFVLLGIAAVARLIHDAHALWVGYEDERPGRGLGVVLMALLAFAVVGFGLSFLVETTEEKLVVAMFITFIALL
FTGYPVAWVLSGVGVAYCGLAFLFDNDLMLWTGLEGTLTGLDYLTLGATVNRVYATMSNAVLVALPMFIFMGLMLDESGV
AERLMTSMQRLFGKTRGGLAITVTMIGIILAASTGIIGASVVLLGVLSLPAMMQQKYSPRLAAGVVSASGTLGILIPPSI
MLVIMADQMALSVGDLFMAAVFPGVIIGGLYLVYIFVISYLKPDVAPVPEGAQSPDWQAVKDVMVAVLPTLGLILAVLGS
IFAGICTPTEASGIGALGATLLALGYRKLTLHKLVNVLVSTFNTTAYIFAIFLGATVFSYVLRELGGDALIEHMIAATGL
GPNGTILFILFIVFLLGFVLDWIEITLIVLPLMRPIVNALGMDIPGFGVLDEPTLVWFVILVAVTLQTSFLTPPVGFALF
YLKGVCPPEIKLLDIYKGIIPFVLLQLTGLALVFLLPALATWLPSVAY

Sequences:
NA

Specific function: NA

COG id: COG4664

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, large permease component

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA