Click here to switch to the map view.

The map label for this gene is 159041963

Identifier: 159041963

GI number: 159041963

Start: 1476815

End: 1477690

Strand: Reverse

Name: 159041963

Synonym: Cmaq_1399

Alternate gene names: NA

Gene position: 1477690-1476815 (Counterclockwise)

Preceding gene: 159041968

Following gene: 159041962

Centisome position: 71.13

GC content: 46.8

Gene sequence:

>876_bases
ATGTCTATAAGGGCACAGGTAATATCAACTGTAAATGAAAAGGGTATTGACGAAATGGGTCCTAATGACCTAATCGTCAA
GTATCATTCAGTTGACGTGAGGACTAGGTCAAGGCTAATAGTTTACTCAAACCAGAAAGCAGTAGTCAGGTTCCAAGGCC
AGATAACGGGTGTATTTGACCCAGGTGCCCATGACCTACAAACCCCAGCTAACCCTGTTTCACAATTCTTCGCCAGGCTT
CAATACTCAGGTAACCTACCATGGGAGGTGGAGGTGCTTTACGTTAGCACTGCTCGCCATGAGGCTAGGAGTGAGGGCTC
AACGCAAACTAAGGAGCTTGTACCAATGAGATACCAGGTAGCCTACTACTTCGTAATATCAGATCCAGTTAAGTTCATTA
ACTCAATCCAGTTCAGTGAACTTAAGTACACTGTTAATGATTTCGCAGTATTCCTATCCCCTATAGTTGATCAATCAGTC
TCCCAGGTGCTTAACATGACTTCACTAAGCGAGATCTACGCTAATCTACATAAGGTAACCGACGCCGTAACAGCATCCCT
TAGGTCAGTGATGGATGAGATGGGTGTTAACCTACTCACCTGCAGGATTGTTAGGCTTGAGCCTGAGGATGAGACCATGA
GGAGGATAATACAGTTCACTGCCATTGGTCTAGACCCAACCACGGCCATTAGGGCTAGGTTAGCTGAAATAATGGCTCAA
CGCTCAGACCCAGCTGCAACAAACATGATGCTTGGCGTACCCTACTACCCAATAAACCTAGTTATCGGTGGGGCTGGTGT
ACTGCCCCAGATTCAGCAAATTCCACCAAGCGTTAAGCCCAGTGAGAAGCCTAGGGAGAGGAGGGAGGAGGAGTAG

Upstream 100 bases:

>100_bases
AATCCTTCCCATGCCTTGAGTTTTCTTTTCCTCACTATGAATAAGTATAATGAACTGGGTTTGAATAATGTTTATAAGTA
AGCCTTAGTTACCTTAAATC

Downstream 100 bases:

>100_bases
TAGGGGTTATGAGTACTAGGGATGTTAGATACGGGGCGGTTGCTGGAATCGGGTACTCATTCACAGTATCAATATTAACA
ATACTCCTTGAACTCCTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: Zinc Finger RanBP2-Type

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MSIRAQVISTVNEKGIDEMGPNDLIVKYHSVDVRTRSRLIVYSNQKAVVRFQGQITGVFDPGAHDLQTPANPVSQFFARL
QYSGNLPWEVEVLYVSTARHEARSEGSTQTKELVPMRYQVAYYFVISDPVKFINSIQFSELKYTVNDFAVFLSPIVDQSV
SQVLNMTSLSEIYANLHKVTDAVTASLRSVMDEMGVNLLTCRIVRLEPEDETMRRIIQFTAIGLDPTTAIRARLAEIMAQ
RSDPAATNMMLGVPYYPINLVIGGAGVLPQIQQIPPSVKPSEKPRERREEE

Sequences:

>Translated_291_residues
MSIRAQVISTVNEKGIDEMGPNDLIVKYHSVDVRTRSRLIVYSNQKAVVRFQGQITGVFDPGAHDLQTPANPVSQFFARL
QYSGNLPWEVEVLYVSTARHEARSEGSTQTKELVPMRYQVAYYFVISDPVKFINSIQFSELKYTVNDFAVFLSPIVDQSV
SQVLNMTSLSEIYANLHKVTDAVTASLRSVMDEMGVNLLTCRIVRLEPEDETMRRIIQFTAIGLDPTTAIRARLAEIMAQ
RSDPAATNMMLGVPYYPINLVIGGAGVLPQIQQIPPSVKPSEKPRERREEE
>Mature_290_residues
SIRAQVISTVNEKGIDEMGPNDLIVKYHSVDVRTRSRLIVYSNQKAVVRFQGQITGVFDPGAHDLQTPANPVSQFFARLQ
YSGNLPWEVEVLYVSTARHEARSEGSTQTKELVPMRYQVAYYFVISDPVKFINSIQFSELKYTVNDFAVFLSPIVDQSVS
QVLNMTSLSEIYANLHKVTDAVTASLRSVMDEMGVNLLTCRIVRLEPEDETMRRIIQFTAIGLDPTTAIRARLAEIMAQR
SDPAATNMMLGVPYYPINLVIGGAGVLPQIQQIPPSVKPSEKPRERREEE

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32668; Mature: 32537

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRAQVISTVNEKGIDEMGPNDLIVKYHSVDVRTRSRLIVYSNQKAVVRFQGQITGVFD
CCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECEECCCEEEEEECCEEEEEEECEEEEEEC
PGAHDLQTPANPVSQFFARLQYSGNLPWEVEVLYVSTARHEARSEGSTQTKELVPMRYQV
CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECHHHHHHCCCCCCHHHHCCEEEEE
AYYFVISDPVKFINSIQFSELKYTVNDFAVFLSPIVDQSVSQVLNMTSLSEIYANLHKVT
EEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAVTASLRSVMDEMGVNLLTCRIVRLEPEDETMRRIIQFTAIGLDPTTAIRARLAEIMAQ
HHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RSDPAATNMMLGVPYYPINLVIGGAGVLPQIQQIPPSVKPSEKPRERREEE
CCCCCHHCEEEECCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCHHHCCCC
>Mature Secondary Structure 
SIRAQVISTVNEKGIDEMGPNDLIVKYHSVDVRTRSRLIVYSNQKAVVRFQGQITGVFD
CCHHHHHHHHHHCCCCCCCCCCEEEEEEEECEECCCEEEEEECCEEEEEEECEEEEEEC
PGAHDLQTPANPVSQFFARLQYSGNLPWEVEVLYVSTARHEARSEGSTQTKELVPMRYQV
CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECHHHHHHCCCCCCHHHHCCEEEEE
AYYFVISDPVKFINSIQFSELKYTVNDFAVFLSPIVDQSVSQVLNMTSLSEIYANLHKVT
EEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAVTASLRSVMDEMGVNLLTCRIVRLEPEDETMRRIIQFTAIGLDPTTAIRARLAEIMAQ
HHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RSDPAATNMMLGVPYYPINLVIGGAGVLPQIQQIPPSVKPSEKPRERREEE
CCCCCHHCEEEECCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA