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The map label for this gene is aubA

Identifier: 159041946

GI number: 159041946

Start: 1456417

End: 1457832

Strand: Reverse

Name: aubA

Synonym: Cmaq_1382

Alternate gene names: 159041946

Gene position: 1457832-1456417 (Counterclockwise)

Preceding gene: 159041948

Following gene: 159041944

Centisome position: 70.17

GC content: 43.57

Gene sequence:

>1416_bases
ATGACTAAGGTAAGGGTTAGGGGGATTTACGCCACAGCACTAACTAAGATTATGCTGGAGGATGGGTACGATATTGTTCA
AGCCACTGACACCATATTAAGCAGATTCAACATACTTCACTCCACTGAACCCCCTGACGTAACTATTAAGGATGATGAGA
ATATCCCAGGGGCATTATTCATAATAGGTAAGTGCAGTGAGGTTAATAAGGTTCTTGAATCCATACTACGTAGGGTTGGG
GACGTAGCTTACAATAAGCCGCCTGTCCCATTATACAGCGTAATAATGGGTGTTGTAGCTGATAATGGACACATTGAGGT
TGCACCAGGTGTCTTAGCCCTACTTGAGGGTTCCAATTACTTTAGGCCTGGTGATAAGTTACCGGTGACCATGGTTAATG
TAACCGGGCAGTTGAGGGCAAGCCCATACATAATGCCAACCACCAGTTACCTCAGAGTCATAGATAGCCCAACGGTTAGG
CTTAGTAGGCATATTAAGGATCCTGATGCTAAAATGATGCTTGTCAGGGTTGGGTTAAGTAAAATTAATCAACTGGGTGG
ATTAGGCATAAGGTGGAGGAGCTCAGCCCAATACCTCAGTGAAGAGGATGCTGAGAAGGCGCTGGATGAGGCAATAAGCC
TAGTCAACGCCATTAGGGTTAAGATCGCTGAGGCAAGGGACTACGATATGTTATTTGAAGGGGAATGCATAGTCTCTGTG
ATACTGGATGCTGAGGCTAGGTGGGTGCTGGATGATATTAGGAACACCATTGTACCCACGGTTAAGGGTCACCACGCCTT
GAAGATAACCATGAAGAACACTGAGATACTTGACTACACTGAGTACCTGGTTGGTGAATTAAAGATGAGGGATGAGTTAG
GTAGAGCTCTGGCTAATTACGCATTAAGTAATTTATCCACGATTAATGTGCATCACGTTAAGGTTAATGGAGAGCACATT
AACCTAGGGCCTGGGGAGAGGGTTCATTATAGTAATGGGTTACTTATCATTAGGAGGGAGTTGAAGCCTGGTGGGACATT
GGATGGGCTTAATGTAGCTAAGGAGTATGGTGACGCAGCCTATAGTGTAATTAATATTGGTGAAAGGCATTTAACCCATA
TTTACGTTTCACACGATGGCTCATTCAAGGGCGCCTACGTGAATATTAACACACCCATTGAGGTTACTTGGGATGGGGTG
ATTTACATTGATCTTGAAGTTGATTTAACCGTTGACAAGGGGTTTAACGTGAATATTATTGATGAGGATAAGTTAAGCAG
TATACCGAGTAGGAGACTTATTAATGAGGCTGAGGAGGAGTTGAGTAGGCTTAAGGGTGATGTGGTTAACCTTGTTCGGA
ACCACATTGACACTTTAAGTAAGCTTGGTTTAAGTATTCATTATCAAGGACCATGA

Upstream 100 bases:

>100_bases
TACGTTAAGTTACCATTAATTATTCAATATATTTCACTCCAGGGGTGTGTTAGGTACATTATAACTTAGTGTTTAAATAA
CCCCAGTTGCATTAATCCTG

Downstream 100 bases:

>100_bases
AGTAGGCTGACTCACCATCACTGTAGTAGCCTGGTATAGTGTGGTGAATCCTGAATCCCAAGCTCCTATATAGGTTAATT
GCAGCATCATTAGATACCCT

Product: hypothetical protein

Products: NA

Alternate protein names: AU-binding protein

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MTKVRVRGIYATALTKIMLEDGYDIVQATDTILSRFNILHSTEPPDVTIKDDENIPGALFIIGKCSEVNKVLESILRRVG
DVAYNKPPVPLYSVIMGVVADNGHIEVAPGVLALLEGSNYFRPGDKLPVTMVNVTGQLRASPYIMPTTSYLRVIDSPTVR
LSRHIKDPDAKMMLVRVGLSKINQLGGLGIRWRSSAQYLSEEDAEKALDEAISLVNAIRVKIAEARDYDMLFEGECIVSV
ILDAEARWVLDDIRNTIVPTVKGHHALKITMKNTEILDYTEYLVGELKMRDELGRALANYALSNLSTINVHHVKVNGEHI
NLGPGERVHYSNGLLIIRRELKPGGTLDGLNVAKEYGDAAYSVINIGERHLTHIYVSHDGSFKGAYVNINTPIEVTWDGV
IYIDLEVDLTVDKGFNVNIIDEDKLSSIPSRRLINEAEEELSRLKGDVVNLVRNHIDTLSKLGLSIHYQGP

Sequences:

>Translated_471_residues
MTKVRVRGIYATALTKIMLEDGYDIVQATDTILSRFNILHSTEPPDVTIKDDENIPGALFIIGKCSEVNKVLESILRRVG
DVAYNKPPVPLYSVIMGVVADNGHIEVAPGVLALLEGSNYFRPGDKLPVTMVNVTGQLRASPYIMPTTSYLRVIDSPTVR
LSRHIKDPDAKMMLVRVGLSKINQLGGLGIRWRSSAQYLSEEDAEKALDEAISLVNAIRVKIAEARDYDMLFEGECIVSV
ILDAEARWVLDDIRNTIVPTVKGHHALKITMKNTEILDYTEYLVGELKMRDELGRALANYALSNLSTINVHHVKVNGEHI
NLGPGERVHYSNGLLIIRRELKPGGTLDGLNVAKEYGDAAYSVINIGERHLTHIYVSHDGSFKGAYVNINTPIEVTWDGV
IYIDLEVDLTVDKGFNVNIIDEDKLSSIPSRRLINEAEEELSRLKGDVVNLVRNHIDTLSKLGLSIHYQGP
>Mature_470_residues
TKVRVRGIYATALTKIMLEDGYDIVQATDTILSRFNILHSTEPPDVTIKDDENIPGALFIIGKCSEVNKVLESILRRVGD
VAYNKPPVPLYSVIMGVVADNGHIEVAPGVLALLEGSNYFRPGDKLPVTMVNVTGQLRASPYIMPTTSYLRVIDSPTVRL
SRHIKDPDAKMMLVRVGLSKINQLGGLGIRWRSSAQYLSEEDAEKALDEAISLVNAIRVKIAEARDYDMLFEGECIVSVI
LDAEARWVLDDIRNTIVPTVKGHHALKITMKNTEILDYTEYLVGELKMRDELGRALANYALSNLSTINVHHVKVNGEHIN
LGPGERVHYSNGLLIIRRELKPGGTLDGLNVAKEYGDAAYSVINIGERHLTHIYVSHDGSFKGAYVNINTPIEVTWDGVI
YIDLEVDLTVDKGFNVNIIDEDKLSSIPSRRLINEAEEELSRLKGDVVNLVRNHIDTLSKLGLSIHYQGP

Specific function: Binds to RNA in loop regions with AU-rich sequences

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AubA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): AUBA_CALMQ (A8M8Y9)

Other databases:

- EMBL:   CP000852
- RefSeq:   YP_001541198.1
- ProteinModelPortal:   A8M8Y9
- GeneID:   5709315
- GenomeReviews:   CP000852_GR
- KEGG:   cma:Cmaq_1382
- OMA:   RGIYSTA
- BioCyc:   CMAQ397948:CMAQ_1382-MONOMER
- HAMAP:   MF_01910
- InterPro:   IPR007295

Pfam domain/function: PF04167 DUF402

EC number: NA

Molecular weight: Translated: 52267; Mature: 52136

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVRVRGIYATALTKIMLEDGYDIVQATDTILSRFNILHSTEPPDVTIKDDENIPGALF
CCEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEE
IIGKCSEVNKVLESILRRVGDVAYNKPPVPLYSVIMGVVADNGHIEVAPGVLALLEGSNY
EEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEECCCEEEEECCCCC
FRPGDKLPVTMVNVTGQLRASPYIMPTTSYLRVIDSPTVRLSRHIKDPDAKMMLVRVGLS
CCCCCCCCEEEEEECEEECCCCEEEECHHHHEEECCCCEEHHHCCCCCCHHEEEEHHHHH
KINQLGGLGIRWRSSAQYLSEEDAEKALDEAISLVNAIRVKIAEARDYDMLFEGECIVSV
HHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEECCCEEEEE
ILDAEARWVLDDIRNTIVPTVKGHHALKITMKNTEILDYTEYLVGELKMRDELGRALANY
EECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHH
ALSNLSTINVHHVKVNGEHINLGPGERVHYSNGLLIIRRELKPGGTLDGLNVAKEYGDAA
HHHCCEEEEEEEEEEECCEEECCCCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHCCHH
YSVINIGERHLTHIYVSHDGSFKGAYVNINTPIEVTWDGVIYIDLEVDLTVDKGFNVNII
HHHHCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEECCEEEEEEEEEEEECCCCEEEEE
DEDKLSSIPSRRLINEAEEELSRLKGDVVNLVRNHIDTLSKLGLSIHYQGP
CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCC
>Mature Secondary Structure 
TKVRVRGIYATALTKIMLEDGYDIVQATDTILSRFNILHSTEPPDVTIKDDENIPGALF
CEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEE
IIGKCSEVNKVLESILRRVGDVAYNKPPVPLYSVIMGVVADNGHIEVAPGVLALLEGSNY
EEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEECCCEEEEECCCCC
FRPGDKLPVTMVNVTGQLRASPYIMPTTSYLRVIDSPTVRLSRHIKDPDAKMMLVRVGLS
CCCCCCCCEEEEEECEEECCCCEEEECHHHHEEECCCCEEHHHCCCCCCHHEEEEHHHHH
KINQLGGLGIRWRSSAQYLSEEDAEKALDEAISLVNAIRVKIAEARDYDMLFEGECIVSV
HHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEECCCEEEEE
ILDAEARWVLDDIRNTIVPTVKGHHALKITMKNTEILDYTEYLVGELKMRDELGRALANY
EECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHH
ALSNLSTINVHHVKVNGEHINLGPGERVHYSNGLLIIRRELKPGGTLDGLNVAKEYGDAA
HHHCCEEEEEEEEEEECCEEECCCCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHCCHH
YSVINIGERHLTHIYVSHDGSFKGAYVNINTPIEVTWDGVIYIDLEVDLTVDKGFNVNII
HHHHCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEECCEEEEEEEEEEEECCCCEEEEE
DEDKLSSIPSRRLINEAEEELSRLKGDVVNLVRNHIDTLSKLGLSIHYQGP
CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA