| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is 159041839
Identifier: 159041839
GI number: 159041839
Start: 1341634
End: 1344018
Strand: Reverse
Name: 159041839
Synonym: Cmaq_1274
Alternate gene names: NA
Gene position: 1344018-1341634 (Counterclockwise)
Preceding gene: 159041843
Following gene: 159041837
Centisome position: 64.69
GC content: 44.28
Gene sequence:
>2385_bases ATGGATCTGTATACCTCAAGGAGTGCAACAGCAGTCACCTCAATAATAGTTGCCTTAGTTGCCGCTGTGGTTGGGTTATA TGCCTCTCATGTTGTATATGCTCAAGAATCCCAAGTAACGTACACGTTCACCACCGCCTATTTCGGGTGGACGTGGTCCC CTGCAGCCCACTACTGGAATCCATTCGCCCCCATTAATTACATAGATTGGCCAGCCTTTGTAGCAATGCCTCTTGCCGCC TATGATGACCCTACTGGTCAGTGGTGGCCTATTCTAGCCAGTAATTGGACTGCGTTTCCTCAAAATAAGACTGTAATCAT CTACCTTAGACATAACATCTATTGGTTTAATGGTTCAGCGGTAATGCCCTTCACTGCTTGGGATGTTTACGCTGAACTCT ACATTGGTGTTAAGGCATTCAGCTGGTACTACCCATACTTAACACCCCAGAATGCGAGTGAGGAGATTAGGGTGCTTAAC AATTATACGTTGGAGATAGTTTTCAACATATGGTCACCCACAGAGTACTATTGGATACTCATGCAGACCATAGCAACTCC ATGGCCCGTGTGGAAGCCTATTGTTGAGAAGCTTCAAACAATGAATGCCAGTCAAGCCTACACCTTTGGTCAAGTTAACA TAACCGAGTTCAACCCACCCATGTGGAGTAATGGGCCATACTACGTGGCATCAATTGGACCAACCTACATAACTCAGAAC CTTGACCCAATGTACTTTGATGGTAAGCCGTTGCTGGCTGAGTGGGATAAGATACTACCATTCCACACATGGCAGTACTA CCCAACATTCATTGCATGGAACAACCCAGGTGCATCAACTATCTTAGCCGCAATAGCAGCCCAGAAGCCAGTTTACATTG AGTGGATAGCCTTCAGTCTTCTTAAGGATTTACAGATAATAAATAGTACACCTGGCTTCAAATACTATGTAATGCCCGAC TTATCAATATTCGGCATAGGTATACCAACATATTACCCGTTTAATATTCCTCAGGTTAGGCAAGCATTCCTATACATCAT TAATAGGAGTGAGGCCGCTGCCGCCTGGGGACCACCGTGGTTAACGTACCCAGTTTACATTAATGTTCCAGCACCAGCAC CAACAGCTGCCTCAGGGCTTTGGTTAACATTCCCGAAGGATCTTAGAAGCATAGCCGTTAACTTCACTGAACCCAATTGG ACTAAGGCAGCTCAACTACTGGAATCAGCCGGCTTAAAGTACAAGAATGGTCAATGGTACCTACCCAACGGAACACCACT AACACTAACAATATACGCATCAGCACCAATGGTTAACTGGATCACGCAGGCTCAAGTCGCTTTTAACCAACTTGAAGAAT TTGGAATACCCGTTAAATTAATTACACTGGAATCATCAACATACTCCACTGAAGTATCTCAATGCCAACTACCTGCTGTG GTTGACTGGATGTTCGCCGGTTCTAATAAGGGTGGTTACTCAACACTATGGATATCATACGATGTTGCATTCACAATGAC ACATCCAGCGCTTTTGCCATCTGGCTGGTGTATTCCTGGCCACACTACGCCTTTCGCCTACCCGATTGTTCAGAATAATG AGATTACCGGCTGGTATTGTAAACCATTAACCACTAACCTGCCTATACCGAATAATACAATTATCTGGTGCATTAACTCA ACCTATGGCTACATTAACTTGAGTAATTGGCAGAATGCCATAATAGCGGCTGAGCCAGGCAGCAGTACCTATGAGGAGCT TCTTAAGGCCTACTTCTCATGGTTTGAGTACTGGGTACCTGGAGTGGAAATATCAACAGCCACAATAACTGCAGCATTCC CAGTAAAGATAACTAACCCAATGTGGGCTTATGAATGCATGAACTTCAAGAATCCTAAGTATACTAAGGCAGCATATTCA CTATTTCACCAATATGCAGTTGCTGGATTACCTCCCGAATTCAATACAGTATTATCACTAGGCGCCTACGCACCGCAGGG TGTTATTCCTCCTTTGGCTGAGGCTATTATTAATGGTAGTCTTTGGACTAATCCGTATCTGCATCAGTACGCTGTCTTCA TTGGTTTGCCTAATCCTGATCCTCAGTTGCAGGCTTGTGTAGCATCATACTTCCACACAACGTACACACCAGTTACTACA ACCACTACTTCAACTGTTACCTCAACCACTACGGCTGTTAGCACTGTTACAAGCACAGTCACAACAACTGCAGTTAGCAC TGTGACTAGCACAGCAACAACCACAGCCATATCAACCGTAACCGTGACTAAACCAGTAATATCAACAGCACTAATAGCAG GAATAGTAATAATAGTAGTGGTTATTGCCATTGTTGCAGCAATAATAGCGTTGAGGAGAAGATAA
Upstream 100 bases:
>100_bases GTTGCATAACTATTCTCACTACTAATGATATTAATATTCAATATTTGTAAAATAAAAATATTGAGAAAAAATTTTTAAAG ATGCTTAGTGTAACTAAAAT
Downstream 100 bases:
>100_bases TTATAAATTAATTAAAAATAAAAATTAATTAATTTTATCATTAATATTCTTAAATAATACTTCATTATGTATAACTTTAT TTAGTATTTTTACAGAGGAG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 794; Mature: 794
Protein sequence:
>794_residues MDLYTSRSATAVTSIIVALVAAVVGLYASHVVYAQESQVTYTFTTAYFGWTWSPAAHYWNPFAPINYIDWPAFVAMPLAA YDDPTGQWWPILASNWTAFPQNKTVIIYLRHNIYWFNGSAVMPFTAWDVYAELYIGVKAFSWYYPYLTPQNASEEIRVLN NYTLEIVFNIWSPTEYYWILMQTIATPWPVWKPIVEKLQTMNASQAYTFGQVNITEFNPPMWSNGPYYVASIGPTYITQN LDPMYFDGKPLLAEWDKILPFHTWQYYPTFIAWNNPGASTILAAIAAQKPVYIEWIAFSLLKDLQIINSTPGFKYYVMPD LSIFGIGIPTYYPFNIPQVRQAFLYIINRSEAAAAWGPPWLTYPVYINVPAPAPTAASGLWLTFPKDLRSIAVNFTEPNW TKAAQLLESAGLKYKNGQWYLPNGTPLTLTIYASAPMVNWITQAQVAFNQLEEFGIPVKLITLESSTYSTEVSQCQLPAV VDWMFAGSNKGGYSTLWISYDVAFTMTHPALLPSGWCIPGHTTPFAYPIVQNNEITGWYCKPLTTNLPIPNNTIIWCINS TYGYINLSNWQNAIIAAEPGSSTYEELLKAYFSWFEYWVPGVEISTATITAAFPVKITNPMWAYECMNFKNPKYTKAAYS LFHQYAVAGLPPEFNTVLSLGAYAPQGVIPPLAEAIINGSLWTNPYLHQYAVFIGLPNPDPQLQACVASYFHTTYTPVTT TTTSTVTSTTTAVSTVTSTVTTTAVSTVTSTATTTAISTVTVTKPVISTALIAGIVIIVVVIAIVAAIIALRRR
Sequences:
>Translated_794_residues MDLYTSRSATAVTSIIVALVAAVVGLYASHVVYAQESQVTYTFTTAYFGWTWSPAAHYWNPFAPINYIDWPAFVAMPLAA YDDPTGQWWPILASNWTAFPQNKTVIIYLRHNIYWFNGSAVMPFTAWDVYAELYIGVKAFSWYYPYLTPQNASEEIRVLN NYTLEIVFNIWSPTEYYWILMQTIATPWPVWKPIVEKLQTMNASQAYTFGQVNITEFNPPMWSNGPYYVASIGPTYITQN LDPMYFDGKPLLAEWDKILPFHTWQYYPTFIAWNNPGASTILAAIAAQKPVYIEWIAFSLLKDLQIINSTPGFKYYVMPD LSIFGIGIPTYYPFNIPQVRQAFLYIINRSEAAAAWGPPWLTYPVYINVPAPAPTAASGLWLTFPKDLRSIAVNFTEPNW TKAAQLLESAGLKYKNGQWYLPNGTPLTLTIYASAPMVNWITQAQVAFNQLEEFGIPVKLITLESSTYSTEVSQCQLPAV VDWMFAGSNKGGYSTLWISYDVAFTMTHPALLPSGWCIPGHTTPFAYPIVQNNEITGWYCKPLTTNLPIPNNTIIWCINS TYGYINLSNWQNAIIAAEPGSSTYEELLKAYFSWFEYWVPGVEISTATITAAFPVKITNPMWAYECMNFKNPKYTKAAYS LFHQYAVAGLPPEFNTVLSLGAYAPQGVIPPLAEAIINGSLWTNPYLHQYAVFIGLPNPDPQLQACVASYFHTTYTPVTT TTTSTVTSTTTAVSTVTSTVTTTAVSTVTSTATTTAISTVTVTKPVISTALIAGIVIIVVVIAIVAAIIALRRR >Mature_794_residues MDLYTSRSATAVTSIIVALVAAVVGLYASHVVYAQESQVTYTFTTAYFGWTWSPAAHYWNPFAPINYIDWPAFVAMPLAA YDDPTGQWWPILASNWTAFPQNKTVIIYLRHNIYWFNGSAVMPFTAWDVYAELYIGVKAFSWYYPYLTPQNASEEIRVLN NYTLEIVFNIWSPTEYYWILMQTIATPWPVWKPIVEKLQTMNASQAYTFGQVNITEFNPPMWSNGPYYVASIGPTYITQN LDPMYFDGKPLLAEWDKILPFHTWQYYPTFIAWNNPGASTILAAIAAQKPVYIEWIAFSLLKDLQIINSTPGFKYYVMPD LSIFGIGIPTYYPFNIPQVRQAFLYIINRSEAAAAWGPPWLTYPVYINVPAPAPTAASGLWLTFPKDLRSIAVNFTEPNW TKAAQLLESAGLKYKNGQWYLPNGTPLTLTIYASAPMVNWITQAQVAFNQLEEFGIPVKLITLESSTYSTEVSQCQLPAV VDWMFAGSNKGGYSTLWISYDVAFTMTHPALLPSGWCIPGHTTPFAYPIVQNNEITGWYCKPLTTNLPIPNNTIIWCINS TYGYINLSNWQNAIIAAEPGSSTYEELLKAYFSWFEYWVPGVEISTATITAAFPVKITNPMWAYECMNFKNPKYTKAAYS LFHQYAVAGLPPEFNTVLSLGAYAPQGVIPPLAEAIINGSLWTNPYLHQYAVFIGLPNPDPQLQACVASYFHTTYTPVTT TTTSTVTSTTTAVSTVTSTVTTTAVSTVTSTATTTAISTVTVTKPVISTALIAGIVIIVVVIAIVAAIIALRRR
Specific function: Unknown
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88697; Mature: 88697
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLYTSRSATAVTSIIVALVAAVVGLYASHVVYAQESQVTYTFTTAYFGWTWSPAAHYWN CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEEEEEEEECEECCCHHHCCC PFAPINYIDWPAFVAMPLAAYDDPTGQWWPILASNWTAFPQNKTVIIYLRHNIYWFNGSA CCCCCCCCCCCHHHHEEHHHCCCCCCCEEEEEECCCEECCCCCEEEEEEEEEEEEECCCE VMPFTAWDVYAELYIGVKAFSWYYPYLTPQNASEEIRVLNNYTLEIVFNIWSPTEYYWIL EEEEEHHHHHHHHHEEEEEEEEEECEECCCCCCCCEEEECCEEEEEEEEECCCCHHHHHE MQTIATPWPVWKPIVEKLQTMNASQAYTFGQVNITEFNPPMWSNGPYYVASIGPTYITQN EHHHCCCCCHHHHHHHHHHHCCCCCCEEECEEEEEECCCCCCCCCCEEEEECCCHHEECC LDPMYFDGKPLLAEWDKILPFHTWQYYPTFIAWNNPGASTILAAIAAQKPVYIEWIAFSL CCCEEECCCCHHHHHHHCCCEEEEEEEEEEEEECCCCHHHHHHHHHCCCCEEEHHHHHHH LKDLQIINSTPGFKYYVMPDLSIFGIGIPTYYPFNIPQVRQAFLYIINRSEAAAAWGPPW HHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHHEEEEECCCCCCCCCCCC LTYPVYINVPAPAPTAASGLWLTFPKDLRSIAVNFTEPNWTKAAQLLESAGLKYKNGQWY EEEEEEEECCCCCCCCCCCEEEECCHHHCEEEEECCCCCHHHHHHHHHHCCCEECCCEEE LPNGTPLTLTIYASAPMVNWITQAQVAFNQLEEFGIPVKLITLESSTYSTEVSQCQLPAV CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHCCCCHH VDWMFAGSNKGGYSTLWISYDVAFTMTHPALLPSGWCIPGHTTPFAYPIVQNNEITGWYC EEEEEECCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEE KPLTTNLPIPNNTIIWCINSTYGYINLSNWQNAIIAAEPGSSTYEELLKAYFSWFEYWVP CCCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC GVEISTATITAAFPVKITNPMWAYECMNFKNPKYTKAAYSLFHQYAVAGLPPEFNTVLSL CEEEEEEEEEEEEEEEECCCEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHEE GAYAPQGVIPPLAEAIINGSLWTNPYLHQYAVFIGLPNPDPQLQACVASYFHTTYTPVTT CCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEE TTTSTVTSTTTAVSTVTSTVTTTAVSTVTSTATTTAISTVTVTKPVISTALIAGIVIIVV ECCCCEECCHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEEEHHHHHHHHHHHHHHHHHH VIAIVAAIIALRRR HHHHHHHHHHHHCC >Mature Secondary Structure MDLYTSRSATAVTSIIVALVAAVVGLYASHVVYAQESQVTYTFTTAYFGWTWSPAAHYWN CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEEEEEEEECEECCCHHHCCC PFAPINYIDWPAFVAMPLAAYDDPTGQWWPILASNWTAFPQNKTVIIYLRHNIYWFNGSA CCCCCCCCCCCHHHHEEHHHCCCCCCCEEEEEECCCEECCCCCEEEEEEEEEEEEECCCE VMPFTAWDVYAELYIGVKAFSWYYPYLTPQNASEEIRVLNNYTLEIVFNIWSPTEYYWIL EEEEEHHHHHHHHHEEEEEEEEEECEECCCCCCCCEEEECCEEEEEEEEECCCCHHHHHE MQTIATPWPVWKPIVEKLQTMNASQAYTFGQVNITEFNPPMWSNGPYYVASIGPTYITQN EHHHCCCCCHHHHHHHHHHHCCCCCCEEECEEEEEECCCCCCCCCCEEEEECCCHHEECC LDPMYFDGKPLLAEWDKILPFHTWQYYPTFIAWNNPGASTILAAIAAQKPVYIEWIAFSL CCCEEECCCCHHHHHHHCCCEEEEEEEEEEEEECCCCHHHHHHHHHCCCCEEEHHHHHHH LKDLQIINSTPGFKYYVMPDLSIFGIGIPTYYPFNIPQVRQAFLYIINRSEAAAAWGPPW HHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHHEEEEECCCCCCCCCCCC LTYPVYINVPAPAPTAASGLWLTFPKDLRSIAVNFTEPNWTKAAQLLESAGLKYKNGQWY EEEEEEEECCCCCCCCCCCEEEECCHHHCEEEEECCCCCHHHHHHHHHHCCCEECCCEEE LPNGTPLTLTIYASAPMVNWITQAQVAFNQLEEFGIPVKLITLESSTYSTEVSQCQLPAV CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHCCCCHH VDWMFAGSNKGGYSTLWISYDVAFTMTHPALLPSGWCIPGHTTPFAYPIVQNNEITGWYC EEEEEECCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEE KPLTTNLPIPNNTIIWCINSTYGYINLSNWQNAIIAAEPGSSTYEELLKAYFSWFEYWVP CCCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC GVEISTATITAAFPVKITNPMWAYECMNFKNPKYTKAAYSLFHQYAVAGLPPEFNTVLSL CEEEEEEEEEEEEEEEECCCEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHEE GAYAPQGVIPPLAEAIINGSLWTNPYLHQYAVFIGLPNPDPQLQACVASYFHTTYTPVTT CCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEE TTTSTVTSTTTAVSTVTSTVTTTAVSTVTSTATTTAISTVTVTKPVISTALIAGIVIIVV ECCCCEECCHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEEEHHHHHHHHHHHHHHHHHH VIAIVAAIIALRRR HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA