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The map label for this gene is 159041714

Identifier: 159041714

GI number: 159041714

Start: 1204591

End: 1205322

Strand: Reverse

Name: 159041714

Synonym: Cmaq_1149

Alternate gene names: NA

Gene position: 1205322-1204591 (Counterclockwise)

Preceding gene: 159041715

Following gene: 159041713

Centisome position: 58.02

GC content: 42.62

Gene sequence:

>732_bases
GTGGAGGAAACCATTGAGAATACCATGGTGGATAAGGTTGCCACCTTAATAGCCGGGTCAATAGTTATGGCTGATTCACC
GGGTAAGGAGCTTAAACGCTGGAGGGAGTACTTCAACATACCTCAAACTGAGTTGGCCATAAAGTTATCAACGACACCAA
GTGTGATCAGTGACTATGAGTCAGGTAGGAGGAAGTCCCCTGGATCATACTTCATTAAGAAGTTTGTTAAAGCCTTAATA
GATATTGAACTGGAGAAGGGTGGTTCAAGGCTTCAACTACTCATTAAGCAATTATCAATTGGTGATAAGTATACCTTAGC
TGTGGTTGATATGAAGGATTACGTTAACCCAATAAGCCTCGAAACATTCCTAAAGGCGATAAACGCATCCCTAGTAGTGC
CCCCAGCCACGAGAATGGATATTCACGGATACACCATGGTTGATAGCATTAAGCTACTGCTTGATGTCCCATCATACGAG
TACCTTAAGCTATATGGTTCAACAACCCAGAGGGCTGCCATATTCATTAACACTAGGTACGGTAGGTCACCTTTAGTAGC
CATAAAGGCGATGATGGCGTTCGTCGACTTTAAACCATCAATAGTTGTTCTACATGGCTTAGATAAACCGGATTACCTAG
GTATTGAAGTGGCTAGGAGGGAGAAGATACCTTTAGCCATGAGTAACATGGATGTTGATGAAATGGTTAGGGTACTTAGA
TCACTTGGTTAA

Upstream 100 bases:

>100_bases
TTTGATTCCAGTAATGCATCTTAGGGAGAGTATTCAAGGCTTAACTTACTTAACGGAATTAGGCGAAAAAGTATTAAATA
GTACTTGCTTCATTTAAACC

Downstream 100 bases:

>100_bases
CCCGCTACATTGAGATACCTACTAGTGGATTATTAATTCGAAATAACTTAGGGGGTTTTAAATCACAGTGAAACTAATCA
ACGTGGAGTACTCCTTAATT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MEETIENTMVDKVATLIAGSIVMADSPGKELKRWREYFNIPQTELAIKLSTTPSVISDYESGRRKSPGSYFIKKFVKALI
DIELEKGGSRLQLLIKQLSIGDKYTLAVVDMKDYVNPISLETFLKAINASLVVPPATRMDIHGYTMVDSIKLLLDVPSYE
YLKLYGSTTQRAAIFINTRYGRSPLVAIKAMMAFVDFKPSIVVLHGLDKPDYLGIEVARREKIPLAMSNMDVDEMVRVLR
SLG

Sequences:

>Translated_243_residues
MEETIENTMVDKVATLIAGSIVMADSPGKELKRWREYFNIPQTELAIKLSTTPSVISDYESGRRKSPGSYFIKKFVKALI
DIELEKGGSRLQLLIKQLSIGDKYTLAVVDMKDYVNPISLETFLKAINASLVVPPATRMDIHGYTMVDSIKLLLDVPSYE
YLKLYGSTTQRAAIFINTRYGRSPLVAIKAMMAFVDFKPSIVVLHGLDKPDYLGIEVARREKIPLAMSNMDVDEMVRVLR
SLG
>Mature_243_residues
MEETIENTMVDKVATLIAGSIVMADSPGKELKRWREYFNIPQTELAIKLSTTPSVISDYESGRRKSPGSYFIKKFVKALI
DIELEKGGSRLQLLIKQLSIGDKYTLAVVDMKDYVNPISLETFLKAINASLVVPPATRMDIHGYTMVDSIKLLLDVPSYE
YLKLYGSTTQRAAIFINTRYGRSPLVAIKAMMAFVDFKPSIVVLHGLDKPDYLGIEVARREKIPLAMSNMDVDEMVRVLR
SLG

Specific function: Unknown

COG id: COG1709

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR017271
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 27258; Mature: 27258

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEETIENTMVDKVATLIAGSIVMADSPGKELKRWREYFNIPQTELAIKLSTTPSVISDYE
CCCHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCHHEEEEECCCCHHHHHHH
SGRRKSPGSYFIKKFVKALIDIELEKGGSRLQLLIKQLSIGDKYTLAVVDMKDYVNPISL
CCCCCCCHHHHHHHHHHHHHEEHCCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCH
ETFLKAINASLVVPPATRMDIHGYTMVDSIKLLLDVPSYEYLKLYGSTTQRAAIFINTRY
HHHHHHHCCCEEECCCCCEEECCCHHHHHHHHEEECCCHHEEEEECCCCCEEEEEEECCC
GRSPLVAIKAMMAFVDFKPSIVVLHGLDKPDYLGIEVARREKIPLAMSNMDVDEMVRVLR
CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCCCEEECCCCHHHHHHHHH
SLG
HCC
>Mature Secondary Structure
MEETIENTMVDKVATLIAGSIVMADSPGKELKRWREYFNIPQTELAIKLSTTPSVISDYE
CCCHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCHHEEEEECCCCHHHHHHH
SGRRKSPGSYFIKKFVKALIDIELEKGGSRLQLLIKQLSIGDKYTLAVVDMKDYVNPISL
CCCCCCCHHHHHHHHHHHHHEEHCCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCH
ETFLKAINASLVVPPATRMDIHGYTMVDSIKLLLDVPSYEYLKLYGSTTQRAAIFINTRY
HHHHHHHCCCEEECCCCCEEECCCHHHHHHHHEEECCCHHEEEEECCCCCEEEEEEECCC
GRSPLVAIKAMMAFVDFKPSIVVLHGLDKPDYLGIEVARREKIPLAMSNMDVDEMVRVLR
CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCCCEEECCCCHHHHHHHHH
SLG
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]