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The map label for this gene is 159041621

Identifier: 159041621

GI number: 159041621

Start: 1104232

End: 1104768

Strand: Reverse

Name: 159041621

Synonym: Cmaq_1054

Alternate gene names: NA

Gene position: 1104768-1104232 (Counterclockwise)

Preceding gene: 159041622

Following gene: 159041618

Centisome position: 53.18

GC content: 44.69

Gene sequence:

>537_bases
ATGCGGATTCCGTTCTGCGAATTCTGCGTGAAGACGAGGCTGTTTTGCAGCAAATGCCAGTCCCTGCTTAACAGTGGACA
GTACGAGATGCATGACGTCGACGTCATAGATGCTATCCTTAAGTTAACTGATAATGACCAGAAGCTTAATAATATGCTTA
GTAACGTTGAGTACTATAAGTCCTATGAGGTTGATGACACATACTTCATCGCCTTAAAGGGTATTAGGCGAGTACCGATT
AACGTAGTTAGGCAAATTGAGGATAAGCTCTCAGAGGCCCTTAATAGGAGGGTTAAGATAATTGAGTACACGGCTGATAT
TAATGAATTAGTGACCCAGGTGGCTTACCCAGCTAGGCCAACTGTGGCCACGACTTGGCTGCCTGATGGAACTAATGAAA
CTGAGGTTAGGATAATGAGGAGGGATGCTAGGAGGCTGAGGCTTAGGCCATCTGACATGGCTAGGTTACTGAGCGCCATA
ACTAATAGGAACGTTAAGGTTAAGGTAATTAGCCACGATCAATTAAACACCGCGTAA

Upstream 100 bases:

>100_bases
TATTGGGAGGAGACGTAAAGTTACTGCGGATGGTTGATCATGCTTAACATCACTGCTCAGGGAGGAAAGTTTTATATATC
CTTACTCTAATGAGGGGTTG

Downstream 100 bases:

>100_bases
TCAAGGAGGGGAGGCTTAACTAGGCATTAACCCAGCTTACACCATACACGGCGTTATGATGCCACTTCCCTTAGGTTAGA
TTCCACAGCCCTAGTAATCA

Product: transcription elongation factor NusA-like protein

Products: NA

Alternate protein names: Transcription Elongation Factor

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MRIPFCEFCVKTRLFCSKCQSLLNSGQYEMHDVDVIDAILKLTDNDQKLNNMLSNVEYYKSYEVDDTYFIALKGIRRVPI
NVVRQIEDKLSEALNRRVKIIEYTADINELVTQVAYPARPTVATTWLPDGTNETEVRIMRRDARRLRLRPSDMARLLSAI
TNRNVKVKVISHDQLNTA

Sequences:

>Translated_178_residues
MRIPFCEFCVKTRLFCSKCQSLLNSGQYEMHDVDVIDAILKLTDNDQKLNNMLSNVEYYKSYEVDDTYFIALKGIRRVPI
NVVRQIEDKLSEALNRRVKIIEYTADINELVTQVAYPARPTVATTWLPDGTNETEVRIMRRDARRLRLRPSDMARLLSAI
TNRNVKVKVISHDQLNTA
>Mature_178_residues
MRIPFCEFCVKTRLFCSKCQSLLNSGQYEMHDVDVIDAILKLTDNDQKLNNMLSNVEYYKSYEVDDTYFIALKGIRRVPI
NVVRQIEDKLSEALNRRVKIIEYTADINELVTQVAYPARPTVATTWLPDGTNETEVRIMRRDARRLRLRPSDMARLLSAI
TNRNVKVKVISHDQLNTA

Specific function: Unknown

COG id: COG0195

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20654; Mature: 20654

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIPFCEFCVKTRLFCSKCQSLLNSGQYEMHDVDVIDAILKLTDNDQKLNNMLSNVEYYK
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SYEVDDTYFIALKGIRRVPINVVRQIEDKLSEALNRRVKIIEYTADINELVTQVAYPARP
CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHCCCCCC
TVATTWLPDGTNETEVRIMRRDARRLRLRPSDMARLLSAITNRNVKVKVISHDQLNTA
CEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MRIPFCEFCVKTRLFCSKCQSLLNSGQYEMHDVDVIDAILKLTDNDQKLNNMLSNVEYYK
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SYEVDDTYFIALKGIRRVPINVVRQIEDKLSEALNRRVKIIEYTADINELVTQVAYPARP
CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHCCCCCC
TVATTWLPDGTNETEVRIMRRDARRLRLRPSDMARLLSAITNRNVKVKVISHDQLNTA
CEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA