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The map label for this gene is yggR [C]

Identifier: 159041458

GI number: 159041458

Start: 928689

End: 930056

Strand: Reverse

Name: yggR [C]

Synonym: Cmaq_0886

Alternate gene names: 159041458

Gene position: 930056-928689 (Counterclockwise)

Preceding gene: 159041460

Following gene: 159041457

Centisome position: 44.77

GC content: 40.5

Gene sequence:

>1368_bases
ATGCATGTATCATTAGTTAAACCCACTGGTAGCATACTGTCCAGTAAGGTAATTGTTAATTTAGGTATTAGAACAATCAT
TGAATATAGGAGTGTTAGTAATGTTGTCCAAGTCTTTCTAATGGACCAAGTCCCAGAGTATTTAACCATAGTTGATCCAT
TATACTTCGAGGAGTGGATTAAGCTTGGTAAGAACCCTATTAAATTAATTAAGATTTACCGTGGTATCTTAAGTAAATTA
AATCATAAACCCACTGATGAAAACTTTAACAGCCTTATTAAGGCTATTATTGATAGGTGGCTTAACGCCTATGGTTCAAT
AACCCCACTACTCATGGATGATGACATAACTGACATATATGTTGACACTAATGGCGTTAGAGTTAGCCATAGGGATTATG
GATTATGCTTCGTTAAGTTAAGTGAAGTTAAGGTAATTAGACCGGTGAGGCTAATTCCAATGAGGCTCATTGAATCAACA
TTAACTGTAAGGGACCTGGTTAATCGGGTGGCGGTTAATGCTGCTAAAAGAACAAGAACCCCATTAACTGCATACATGCC
TCTAGTATCTGTAACTGACCCTGAATACAGGGTTAGATTCACCATATCAACAATGCCTGTATCGCAAACAAGCGTGCATA
TTAGGGTTCTGCCGAGTAAACCATGGACATTACCTACACTTGTTAAACTGGGCATGTTAACTGTTAACCAAGCTGCATTA
CTATGGAAGTTGGCTGATGAGAAGGTGCCTATACTTATAGGTGGATCCATGGGTTCAGGTAAAACTAGTTTAGCCAATGC
CATAGCAATGATGCTTAAGCCTAGTATGCTTAAGGTACTGGTGATGGATGTTGATGAGATGAATCTACCAGGGCATTTAT
CAGTTAAACTATATGAGAGGAGGTCCTTCGGCCTAGGGGTTAAGCCCATAACTAAGGATGAGTTAATAGCACACGCGTTG
AGAATGGGTGCTGACTACGTTATCGTGAATGAGGTTAGGGAACCTGAGGAGGTTAAGGCGTGGTTGAACGCAGTAACCAC
TGGGCATGGGGGTATTACAACCTTTCACGCAGATGATTATCAACAGATGGTGAAGAGACTTACAGTTCTTGCCCCAGGTT
CCGAGGAGGTTTTAAAGAGTGTAATTGCGGTTATAGTGGGTTCAGAACTGGTGCCGGTGAGTGTTGGAGGTAATTTGAAG
GTTATGAGGAGGCTTAGGTATGTTAAGGACATTATAGTGCCCAGTGAGGTTAATGAAAAGTACCTGAGCATTAAGGATGA
CTTACACTTAAGGAGGAGCATTATAGGGAGCTTAATGGATTCATCAATTGATCAACTCCTATCAACAATAGGTAAACTCT
ACTCCTAG

Upstream 100 bases:

>100_bases
CTTAGCCTTAAGGTTAGTGGAATGTAGGGTAATGGTTAATCCCACATAACCCTACGTGAGTCAGTAATAACATTAACTGA
ACCTAGTATTGAAACCAATA

Downstream 100 bases:

>100_bases
CCGCTGTTAAGGATAAGCGTTATTAAGGTATGCTTGAAGCAGTTAACGTGAGTTGGAGCCTACTCACCGCCCTTAGGGAG
AGGCCTGGGGAGGTTAGAAG

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MHVSLVKPTGSILSSKVIVNLGIRTIIEYRSVSNVVQVFLMDQVPEYLTIVDPLYFEEWIKLGKNPIKLIKIYRGILSKL
NHKPTDENFNSLIKAIIDRWLNAYGSITPLLMDDDITDIYVDTNGVRVSHRDYGLCFVKLSEVKVIRPVRLIPMRLIEST
LTVRDLVNRVAVNAAKRTRTPLTAYMPLVSVTDPEYRVRFTISTMPVSQTSVHIRVLPSKPWTLPTLVKLGMLTVNQAAL
LWKLADEKVPILIGGSMGSGKTSLANAIAMMLKPSMLKVLVMDVDEMNLPGHLSVKLYERRSFGLGVKPITKDELIAHAL
RMGADYVIVNEVREPEEVKAWLNAVTTGHGGITTFHADDYQQMVKRLTVLAPGSEEVLKSVIAVIVGSELVPVSVGGNLK
VMRRLRYVKDIIVPSEVNEKYLSIKDDLHLRRSIIGSLMDSSIDQLLSTIGKLYS

Sequences:

>Translated_455_residues
MHVSLVKPTGSILSSKVIVNLGIRTIIEYRSVSNVVQVFLMDQVPEYLTIVDPLYFEEWIKLGKNPIKLIKIYRGILSKL
NHKPTDENFNSLIKAIIDRWLNAYGSITPLLMDDDITDIYVDTNGVRVSHRDYGLCFVKLSEVKVIRPVRLIPMRLIEST
LTVRDLVNRVAVNAAKRTRTPLTAYMPLVSVTDPEYRVRFTISTMPVSQTSVHIRVLPSKPWTLPTLVKLGMLTVNQAAL
LWKLADEKVPILIGGSMGSGKTSLANAIAMMLKPSMLKVLVMDVDEMNLPGHLSVKLYERRSFGLGVKPITKDELIAHAL
RMGADYVIVNEVREPEEVKAWLNAVTTGHGGITTFHADDYQQMVKRLTVLAPGSEEVLKSVIAVIVGSELVPVSVGGNLK
VMRRLRYVKDIIVPSEVNEKYLSIKDDLHLRRSIIGSLMDSSIDQLLSTIGKLYS
>Mature_455_residues
MHVSLVKPTGSILSSKVIVNLGIRTIIEYRSVSNVVQVFLMDQVPEYLTIVDPLYFEEWIKLGKNPIKLIKIYRGILSKL
NHKPTDENFNSLIKAIIDRWLNAYGSITPLLMDDDITDIYVDTNGVRVSHRDYGLCFVKLSEVKVIRPVRLIPMRLIEST
LTVRDLVNRVAVNAAKRTRTPLTAYMPLVSVTDPEYRVRFTISTMPVSQTSVHIRVLPSKPWTLPTLVKLGMLTVNQAAL
LWKLADEKVPILIGGSMGSGKTSLANAIAMMLKPSMLKVLVMDVDEMNLPGHLSVKLYERRSFGLGVKPITKDELIAHAL
RMGADYVIVNEVREPEEVKAWLNAVTTGHGGITTFHADDYQQMVKRLTVLAPGSEEVLKSVIAVIVGSELVPVSVGGNLK
VMRRLRYVKDIIVPSEVNEKYLSIKDDLHLRRSIIGSLMDSSIDQLLSTIGKLYS

Specific function: Unknown

COG id: COG0630

COG function: function code NU; Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 50849; Mature: 50849

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVSLVKPTGSILSSKVIVNLGIRTIIEYRSVSNVVQVFLMDQVPEYLTIVDPLYFEEWI
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHH
KLGKNPIKLIKIYRGILSKLNHKPTDENFNSLIKAIIDRWLNAYGSITPLLMDDDITDIY
HHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEE
VDTNGVRVSHRDYGLCFVKLSEVKVIRPVRLIPMRLIESTLTVRDLVNRVAVNAAKRTRT
EECCCEEEECCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PLTAYMPLVSVTDPEYRVRFTISTMPVSQTSVHIRVLPSKPWTLPTLVKLGMLTVNQAAL
CHHHHCCEEEECCCCEEEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
LWKLADEKVPILIGGSMGSGKTSLANAIAMMLKPSMLKVLVMDVDEMNLPGHLSVKLYER
HEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHEECHHCCCCCCCEEEEEEEC
RSFGLGVKPITKDELIAHALRMGADYVIVNEVREPEEVKAWLNAVTTGHGGITTFHADDY
CCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHH
QQMVKRLTVLAPGSEEVLKSVIAVIVGSELVPVSVGGNLKVMRRLRYVKDIIVPSEVNEK
HHHHHHHHEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHH
YLSIKDDLHLRRSIIGSLMDSSIDQLLSTIGKLYS
HHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHVSLVKPTGSILSSKVIVNLGIRTIIEYRSVSNVVQVFLMDQVPEYLTIVDPLYFEEWI
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHH
KLGKNPIKLIKIYRGILSKLNHKPTDENFNSLIKAIIDRWLNAYGSITPLLMDDDITDIY
HHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEE
VDTNGVRVSHRDYGLCFVKLSEVKVIRPVRLIPMRLIESTLTVRDLVNRVAVNAAKRTRT
EECCCEEEECCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PLTAYMPLVSVTDPEYRVRFTISTMPVSQTSVHIRVLPSKPWTLPTLVKLGMLTVNQAAL
CHHHHCCEEEECCCCEEEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
LWKLADEKVPILIGGSMGSGKTSLANAIAMMLKPSMLKVLVMDVDEMNLPGHLSVKLYER
HEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHEECHHCCCCCCCEEEEEEEC
RSFGLGVKPITKDELIAHALRMGADYVIVNEVREPEEVKAWLNAVTTGHGGITTFHADDY
CCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHH
QQMVKRLTVLAPGSEEVLKSVIAVIVGSELVPVSVGGNLKVMRRLRYVKDIIVPSEVNEK
HHHHHHHHEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHH
YLSIKDDLHLRRSIIGSLMDSSIDQLLSTIGKLYS
HHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]