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The map label for this gene is 159041439

Identifier: 159041439

GI number: 159041439

Start: 910965

End: 911225

Strand: Reverse

Name: 159041439

Synonym: Cmaq_0866

Alternate gene names: NA

Gene position: 911225-910965 (Counterclockwise)

Preceding gene: 159041440

Following gene: 159041438

Centisome position: 43.86

GC content: 39.85

Gene sequence:

>261_bases
ATGCAGGAGAAAACAGAGGTTAATAGTGTACAGCCTTTAAGGGCTTTAGGCATGATGGTTAATAAGAGCGTGGTTGTTAA
GCTTAAGGCAGGTAGAGTTCTCAGTGGTACTTTAAGATTCATAGACCAATGCATGAACATAGTGCTTGATGATGCGGAGG
AGTTAGACACTAGGACTAATCAAGTGATTGTTAGGTATGGTAAAGTACTAATAAGGGGGAATCAAGTACTCTACGTATCC
GTAAGGAATGAATTAGAGTGA

Upstream 100 bases:

>100_bases
TAAGTATACAGTATGCGTAAGCTTCCTCATAATGCAGATTAACAGAGATGAGTTAAGAGTAGGCGTAATATTTTTATATA
GTACCAATGAAATGGGCTGA

Downstream 100 bases:

>100_bases
CCCAATATGGCCAGGAACATAGTAGTCTCAGGGATAAGGAGACCTCCAACTGAGGATTTACCGGTTGAGTTAGTTGAGAG
GAAGGGGTTAGGTCACCCTG

Product: like-Sm ribonucleoprotein core

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 86

Protein sequence:

>86_residues
MQEKTEVNSVQPLRALGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEELDTRTNQVIVRYGKVLIRGNQVLYVS
VRNELE

Sequences:

>Translated_86_residues
MQEKTEVNSVQPLRALGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEELDTRTNQVIVRYGKVLIRGNQVLYVS
VRNELE
>Mature_86_residues
MQEKTEVNSVQPLRALGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEELDTRTNQVIVRYGKVLIRGNQVLYVS
VRNELE

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the snRNP Sm proteins family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR001163
- InterPro:   IPR006649
- InterPro:   IPR022901 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 9735; Mature: 9735

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEKTEVNSVQPLRALGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEELDTRTN
CCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCHHH
QVIVRYGKVLIRGNQVLYVSVRNELE
HHHHEECEEEEECCEEEEEEECCCCC
>Mature Secondary Structure
MQEKTEVNSVQPLRALGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEELDTRTN
CCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCHHH
QVIVRYGKVLIRGNQVLYVSVRNELE
HHHHEECEEEEECCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]