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The map label for this gene is asnC [C]

Identifier: 159041401

GI number: 159041401

Start: 869679

End: 870173

Strand: Reverse

Name: asnC [C]

Synonym: Cmaq_0828

Alternate gene names: 159041401

Gene position: 870173-869679 (Counterclockwise)

Preceding gene: 159041402

Following gene: 159041399

Centisome position: 41.88

GC content: 41.82

Gene sequence:

>495_bases
ATGATGGATGAATTAGATATTAAAATCCTGGAATCCCTGCAAAGAAATGGGAGAATCACAGTATCCAGGTTAGCTGAGTT
ACTTAATAAACCTAGGACAACGATAATGAGTAGATTAGCCCGATTAGAGTCAAGTAAAATAATATTGGGCTATAAGACTG
TTATTGACCCAATTCAAATGGGTTATACGATACAGGCTTATGTCCTCTTAACAGTCAGGAGAGTTCCTGGGGCGACTAAG
CCTAGTCAAGTCGCCTTAGCTGAGAGGATAATATATGATTCAGATAATGAAAAGGACCTACCCTGGGTTGAGGAGGCTCA
GGTTGTTACTGGGCAATATGACTTAGTGCTTAAGGTTTGGGCCAAGGACCTTAAGCAGCTCTCAAACTTTCTAATAAGAT
ACCTACCCACGCACCCGGATGTGGTTAAGTCTGAGACCATGATTGTTCTTGAGAACGTGGCCACTTGGAGAAATAGGAAC
ATGCCTATTAGGTAG

Upstream 100 bases:

>100_bases
TCAATTCATACGTGGTTCGACTAAGGTTGAGGGGGCGGAATGATTGGTCTCATCTCTGTGAAACATAATGTTAATTAATC
TCCAGACCTTAAGCTAGCTA

Downstream 100 bases:

>100_bases
TGTTTAAATAAAGTACCTTGTTAAGTTAATTAAAGACTCATAATCCCCCGGCACTGATAGTAATACACCCTCAACCCCAA
TCCCCCTAAGGCCGTTGAGT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MMDELDIKILESLQRNGRITVSRLAELLNKPRTTIMSRLARLESSKIILGYKTVIDPIQMGYTIQAYVLLTVRRVPGATK
PSQVALAERIIYDSDNEKDLPWVEEAQVVTGQYDLVLKVWAKDLKQLSNFLIRYLPTHPDVVKSETMIVLENVATWRNRN
MPIR

Sequences:

>Translated_164_residues
MMDELDIKILESLQRNGRITVSRLAELLNKPRTTIMSRLARLESSKIILGYKTVIDPIQMGYTIQAYVLLTVRRVPGATK
PSQVALAERIIYDSDNEKDLPWVEEAQVVTGQYDLVLKVWAKDLKQLSNFLIRYLPTHPDVVKSETMIVLENVATWRNRN
MPIR
>Mature_164_residues
MMDELDIKILESLQRNGRITVSRLAELLNKPRTTIMSRLARLESSKIILGYKTVIDPIQMGYTIQAYVLLTVRRVPGATK
PSQVALAERIIYDSDNEKDLPWVEEAQVVTGQYDLVLKVWAKDLKQLSNFLIRYLPTHPDVVKSETMIVLENVATWRNRN
MPIR

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=152, Percent_Identity=28.9473684210526, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18894; Mature: 18894

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDELDIKILESLQRNGRITVSRLAELLNKPRTTIMSRLARLESSKIILGYKTVIDPIQM
CCCCHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHC
GYTIQAYVLLTVRRVPGATKPSQVALAERIIYDSDNEKDLPWVEEAQVVTGQYDLVLKVW
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCEEECCCHHHHHHHH
AKDLKQLSNFLIRYLPTHPDVVKSETMIVLENVATWRNRNMPIR
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MMDELDIKILESLQRNGRITVSRLAELLNKPRTTIMSRLARLESSKIILGYKTVIDPIQM
CCCCHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHC
GYTIQAYVLLTVRRVPGATKPSQVALAERIIYDSDNEKDLPWVEEAQVVTGQYDLVLKVW
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCEEECCCHHHHHHHH
AKDLKQLSNFLIRYLPTHPDVVKSETMIVLENVATWRNRNMPIR
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA