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The map label for this gene is lig [H]

Identifier: 159041361

GI number: 159041361

Start: 823180

End: 824133

Strand: Reverse

Name: lig [H]

Synonym: Cmaq_0788

Alternate gene names: 159041361

Gene position: 824133-823180 (Counterclockwise)

Preceding gene: 159041363

Following gene: 159041359

Centisome position: 39.67

GC content: 41.3

Gene sequence:

>954_bases
ATGATTAGCGTCATTAGGAGGTTTGGTGGAATTGAAGTCTCATGCTGCGGCCATAGTATACTCGTAGATCCTACACGTAG
ATTCATAGATAACTATGATGCGGTACTGATAACTCACGGTCATAGTGACCATTATACAAGCCACATATCTAAGGCTAGAA
GGATAATAATGAGCGGTGAAACCTTAAAGATACTCAGGGAGTTCAGGGGGTTAAGGCTTGGAGCCGGTGTAACTGTTGCG
TATCCTAATAGGCCAATAGTCTTTGACGACTTCAGTGTGGTTCCATTAAATGCAGGTCACGTAATGGGTAGCTTAATGTA
CTTAATTGAATTCAAGTTTGGTTCAGTATTACTAACCGGTGACATGAATATTGAAGACAGCATCATACTCAAGGGGGCTG
AACCCTACCCCGACGTAGACATATTAGTCATTGAGAGCACCTATGGGGATCCAAGTTTCCACTTTGAGCCACGTGACAAT
GTATATGATAATATAATTGACTTAGCGGAAAGAACAGTGAGGAAGGGACTCAGGTTGGTGCTTTCAGGTTTTGCACTTGG
TAAGGGGCAGGAATTATATAAGCTGCTCATTAGTAATGGATTCAATGCGGCAATGGATAAGAACGTGTATTCACTCAATA
GAATACTATTGAATGTGGGGGCAATATCCAGTAATGGTGACATCATAGTTGCTGACATGCCTCCCAGGATTCAACCAAGT
AATGATTCAGTAATAGCATTAGTAACAGGTGGTGCTCCTGGAAGGTGGATTAGGAGGCATGTTCACATTCAGTTAAGTAG
TCATAGTGACTTCAATGGATTAGTTGACTTTGCGGTTAACTCGAGAGCGAAGAGAATATACACTATTTACGGTCATAGCG
AAAAACTAGCTAGGCATCTGAGGCTTGAGTATGGTTTAAACTCATACCCCATACCTAATAATACGTTAATTTAA

Upstream 100 bases:

>100_bases
ACACATACCCTTAAAAGACAATGCAGCCGTGGGAAACCGCTTTATCCTGGTTTAGTAATGGGAAAAGTAATTAAATTGGG
TTAATGTTAACTAAACTAAG

Downstream 100 bases:

>100_bases
CTATACATTATACGCTTCACTGCAACTACCGTCAATCTCATAGATGTAGACTGGAGTGAACCTAGCAGTCAATGAATCTC
AATAACCTGTAATTGGTAAT

Product: putative mRNA 3-end processing factor

Products: NA

Alternate protein names: Polydeoxyribonucleotide synthase [ATP] [H]

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MISVIRRFGGIEVSCCGHSILVDPTRRFIDNYDAVLITHGHSDHYTSHISKARRIIMSGETLKILREFRGLRLGAGVTVA
YPNRPIVFDDFSVVPLNAGHVMGSLMYLIEFKFGSVLLTGDMNIEDSIILKGAEPYPDVDILVIESTYGDPSFHFEPRDN
VYDNIIDLAERTVRKGLRLVLSGFALGKGQELYKLLISNGFNAAMDKNVYSLNRILLNVGAISSNGDIIVADMPPRIQPS
NDSVIALVTGGAPGRWIRRHVHIQLSSHSDFNGLVDFAVNSRAKRIYTIYGHSEKLARHLRLEYGLNSYPIPNNTLI

Sequences:

>Translated_317_residues
MISVIRRFGGIEVSCCGHSILVDPTRRFIDNYDAVLITHGHSDHYTSHISKARRIIMSGETLKILREFRGLRLGAGVTVA
YPNRPIVFDDFSVVPLNAGHVMGSLMYLIEFKFGSVLLTGDMNIEDSIILKGAEPYPDVDILVIESTYGDPSFHFEPRDN
VYDNIIDLAERTVRKGLRLVLSGFALGKGQELYKLLISNGFNAAMDKNVYSLNRILLNVGAISSNGDIIVADMPPRIQPS
NDSVIALVTGGAPGRWIRRHVHIQLSSHSDFNGLVDFAVNSRAKRIYTIYGHSEKLARHLRLEYGLNSYPIPNNTLI
>Mature_317_residues
MISVIRRFGGIEVSCCGHSILVDPTRRFIDNYDAVLITHGHSDHYTSHISKARRIIMSGETLKILREFRGLRLGAGVTVA
YPNRPIVFDDFSVVPLNAGHVMGSLMYLIEFKFGSVLLTGDMNIEDSIILKGAEPYPDVDILVIESTYGDPSFHFEPRDN
VYDNIIDLAERTVRKGLRLVLSGFALGKGQELYKLLISNGFNAAMDKNVYSLNRILLNVGAISSNGDIIVADMPPRIQPS
NDSVIALVTGGAPGRWIRRHVHIQLSSHSDFNGLVDFAVNSRAKRIYTIYGHSEKLARHLRLEYGLNSYPIPNNTLI

Specific function: DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair [H]

COG id: COG1236

COG function: function code J; Predicted exonuclease of the beta-lactamase fold involved in RNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the ATP- dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000977
- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR016059
- InterPro:   IPR012308
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR011108 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF04675 DNA_ligase_A_N; PF07521 RMMBL [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 35279; Mature: 35279

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVIRRFGGIEVSCCGHSILVDPTRRFIDNYDAVLITHGHSDHYTSHISKARRIIMSGE
CHHHHHHHCCEEEEECCCEEEECCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHEEECCC
TLKILREFRGLRLGAGVTVAYPNRPIVFDDFSVVPLNAGHVMGSLMYLIEFKFGSVLLTG
HHHHHHHHCCEEECCCEEEEECCCCEEECCCEEEEECCHHHHHHHHHHEEECCCCEEEEE
DMNIEDSIILKGAEPYPDVDILVIESTYGDPSFHFEPRDNVYDNIIDLAERTVRKGLRLV
CCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
LSGFALGKGQELYKLLISNGFNAAMDKNVYSLNRILLNVGAISSNGDIIVADMPPRIQPS
HHHCCCCCCHHHHHHHHHCCCCCHHCCCHHHHEEHEEEEEEECCCCCEEEECCCCCCCCC
NDSVIALVTGGAPGRWIRRHVHIQLSSHSDFNGLVDFAVNSRAKRIYTIYGHSEKLARHL
CCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCHHHHHHHH
RLEYGLNSYPIPNNTLI
HHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MISVIRRFGGIEVSCCGHSILVDPTRRFIDNYDAVLITHGHSDHYTSHISKARRIIMSGE
CHHHHHHHCCEEEEECCCEEEECCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHEEECCC
TLKILREFRGLRLGAGVTVAYPNRPIVFDDFSVVPLNAGHVMGSLMYLIEFKFGSVLLTG
HHHHHHHHCCEEECCCEEEEECCCCEEECCCEEEEECCHHHHHHHHHHEEECCCCEEEEE
DMNIEDSIILKGAEPYPDVDILVIESTYGDPSFHFEPRDNVYDNIIDLAERTVRKGLRLV
CCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
LSGFALGKGQELYKLLISNGFNAAMDKNVYSLNRILLNVGAISSNGDIIVADMPPRIQPS
HHHCCCCCCHHHHHHHHHCCCCCHHCCCHHHHEEHEEEEEEECCCCCEEEECCCCCCCCC
NDSVIALVTGGAPGRWIRRHVHIQLSSHSDFNGLVDFAVNSRAKRIYTIYGHSEKLARHL
CCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCHHHHHHHH
RLEYGLNSYPIPNNTLI
HHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA