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The map label for this gene is nth [C]

Identifier: 159041229

GI number: 159041229

Start: 686836

End: 687537

Strand: Reverse

Name: nth [C]

Synonym: Cmaq_0651

Alternate gene names: 159041229

Gene position: 687537-686836 (Counterclockwise)

Preceding gene: 159041230

Following gene: 159041226

Centisome position: 33.09

GC content: 45.3

Gene sequence:

>702_bases
ATGGAGAATATTAGGGATTTACTTAAGGTGTTTGAGGAAATTAGTGAGAAGCTTAGTGAAAATGGGTGGTTTATTAGTGA
ACCAGAATCACCCAAGTGGTGGGGTGGCGCCTTAAGTCCCGAGGAGGTTATTATATCAGCCATACTGGTTCAGCAGACTA
AGTGGGAGAGGGTTAGTGAAGTCATGGCTAAGCTTAGGCAAGGTGGGTTAAACACACTTAAGACTATTGCTGAGCTTAAT
CCACTGGATTTAGCCAATGCACTGAGTGGGGTTAACTTCAGGTTCACTAAGGCTAGTAGATTAGTGAGGATTGCCAGGAC
TATTACATCAATGGGTGGGTTAAGGGCTTTAAGTAAGCTTAGTGACGATGAGGTTAGGGTAATGCTACTATCAATGGATG
GTGTCGGCTACGAGACAGCTGACTCAATAATGCTCTTCGCCCTAAATAGGGTAACAATACCCATCTCAACATACACCATC
AGGGTAATTAAGAGGATTTACGGTTACCTGGGGGGTGGTTACGAGGATTGGAGGCTTACATTAATGAAGCTACTGCCCAG
GGGACTATATGAGTATAAGCTCTTCCACGCTGGTGTGGTGACCACTGGGAAGGAGTGGTGCCTTAAGGAGACACCGAGGT
GTATTGAATGCCCACTACGTAATCAATGCCGCTTCGCCAAGTTAGGCACTAATGCGTATTAA

Upstream 100 bases:

>100_bases
ATTAAACCACCTAGAATTGAATGAAGAGGAGGCGTTAATACGCGTGATTACTGAATGGTGAATAAATGTTAAGTCCCCCA
CTACGTGGGGACTGGAGCAT

Downstream 100 bases:

>100_bases
TTAAGGGTGATGACCCGACTTCTGCAGTTTCAGTATTGCCTCGGCTAAGTCACCATTAGCCTCCTCAAGGGCCTTAATGG
CCTCATCCCTACTTACCCCT

Product: HhH-GPD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MENIRDLLKVFEEISEKLSENGWFISEPESPKWWGGALSPEEVIISAILVQQTKWERVSEVMAKLRQGGLNTLKTIAELN
PLDLANALSGVNFRFTKASRLVRIARTITSMGGLRALSKLSDDEVRVMLLSMDGVGYETADSIMLFALNRVTIPISTYTI
RVIKRIYGYLGGGYEDWRLTLMKLLPRGLYEYKLFHAGVVTTGKEWCLKETPRCIECPLRNQCRFAKLGTNAY

Sequences:

>Translated_233_residues
MENIRDLLKVFEEISEKLSENGWFISEPESPKWWGGALSPEEVIISAILVQQTKWERVSEVMAKLRQGGLNTLKTIAELN
PLDLANALSGVNFRFTKASRLVRIARTITSMGGLRALSKLSDDEVRVMLLSMDGVGYETADSIMLFALNRVTIPISTYTI
RVIKRIYGYLGGGYEDWRLTLMKLLPRGLYEYKLFHAGVVTTGKEWCLKETPRCIECPLRNQCRFAKLGTNAY
>Mature_233_residues
MENIRDLLKVFEEISEKLSENGWFISEPESPKWWGGALSPEEVIISAILVQQTKWERVSEVMAKLRQGGLNTLKTIAELN
PLDLANALSGVNFRFTKASRLVRIARTITSMGGLRALSKLSDDEVRVMLLSMDGVGYETADSIMLFALNRVTIPISTYTI
RVIKRIYGYLGGGYEDWRLTLMKLLPRGLYEYKLFHAGVVTTGKEWCLKETPRCIECPLRNQCRFAKLGTNAY

Specific function: Has Both An Apurinic And/Or Apyrimidinic Endonuclease Activity And A DNA N-Glycosylase Activity. Incises Damaged DNA At Cytosines, Thymines And Guanines. Acts On A Damaged Strand, 5' From The Damaged Site. Required For The Repair Of Both Oxidative DNA Da

COG id: COG2231

COG function: function code L; Uncharacterized protein related to Endonuclease III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Nth/MutY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR003651
- InterPro:   IPR003265
- InterPro:   IPR003583
- InterPro:   IPR023170 [H]

Pfam domain/function: PF00730 HhH-GPD [H]

EC number: 4.2.99.18

Molecular weight: Translated: 26402; Mature: 26402

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENIRDLLKVFEEISEKLSENGWFISEPESPKWWGGALSPEEVIISAILVQQTKWERVSE
CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VMAKLRQGGLNTLKTIAELNPLDLANALSGVNFRFTKASRLVRIARTITSMGGLRALSKL
HHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHC
SDDEVRVMLLSMDGVGYETADSIMLFALNRVTIPISTYTIRVIKRIYGYLGGGYEDWRLT
CCCCEEEEEEEECCCCCHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHCCCHHHHHHH
LMKLLPRGLYEYKLFHAGVVTTGKEWCLKETPRCIECPLRNQCRFAKLGTNAY
HHHHHHHHHHHHHHHHCCHHCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MENIRDLLKVFEEISEKLSENGWFISEPESPKWWGGALSPEEVIISAILVQQTKWERVSE
CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VMAKLRQGGLNTLKTIAELNPLDLANALSGVNFRFTKASRLVRIARTITSMGGLRALSKL
HHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHC
SDDEVRVMLLSMDGVGYETADSIMLFALNRVTIPISTYTIRVIKRIYGYLGGGYEDWRLT
CCCCEEEEEEEECCCCCHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHCCCHHHHHHH
LMKLLPRGLYEYKLFHAGVVTTGKEWCLKETPRCIECPLRNQCRFAKLGTNAY
HHHHHHHHHHHHHHHHCCHHCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Carbon-Oxygen Lyase [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]