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The map label for this gene is 159040828

Identifier: 159040828

GI number: 159040828

Start: 277537

End: 277755

Strand: Reverse

Name: 159040828

Synonym: Cmaq_0242

Alternate gene names: NA

Gene position: 277755-277537 (Counterclockwise)

Preceding gene: 159040832

Following gene: 159040824

Centisome position: 13.37

GC content: 44.75

Gene sequence:

>219_bases
GTGAGTGAGGGTAATAATACCGTTGAGGAGCAGGAGACTGGTGAGGAGGGTATTGAGGAGAGGAAGATATACATGTGCCT
AAGCTGCGGTAGAACCTTCGGTAAGAGTGAGCTTGAGATATTTGGAAGATCAGCAAGCACAATAAGGTGCCCCTACTGCG
GCTACAATATCGTTATTAAGGTTAGGATATTCAAGGGAAGTTCAATAACCGCTGTTTAA

Upstream 100 bases:

>100_bases
ATACATCATTCATGAGTAATCCAGGTAATATAAGGGTGTATCGTTTAGGATAAGCATGATGCGTGGAAACGTATTTTAAG
GGTTGGGGGTTACTGGAATT

Downstream 100 bases:

>100_bases
CGCCTAGAACCTACACTTATTAACCACAGTACCCTTAACGTTAAGACTAAGGCTAAACACATACCCATCCGGGCCACTTG
ACTGCCTACTCCTATCCGTT

Product: RNA polymerase Rbp10

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MSEGNNTVEEQETGEEGIEERKIYMCLSCGRTFGKSELEIFGRSASTIRCPYCGYNIVIKVRIFKGSSITAV

Sequences:

>Translated_72_residues
MSEGNNTVEEQETGEEGIEERKIYMCLSCGRTFGKSELEIFGRSASTIRCPYCGYNIVIKVRIFKGSSITAV
>Mature_71_residues
SEGNNTVEEQETGEEGIEERKIYMCLSCGRTFGKSELEIFGRSASTIRCPYCGYNIVIKVRIFKGSSITAV

Specific function: Unknown

COG id: COG1996

COG function: function code K; DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8018; Mature: 7887

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
5.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEGNNTVEEQETGEEGIEERKIYMCLSCGRTFGKSELEIFGRSASTIRCPYCGYNIVIK
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCEEECCCCCCEEEEE
VRIFKGSSITAV
EEEECCCCEECC
>Mature Secondary Structure 
SEGNNTVEEQETGEEGIEERKIYMCLSCGRTFGKSELEIFGRSASTIRCPYCGYNIVIK
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCEEECCCCCCEEEEE
VRIFKGSSITAV
EEEECCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA