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The map label for this gene is ychF [C]

Identifier: 159040657

GI number: 159040657

Start: 79548

End: 80807

Strand: Reverse

Name: ychF [C]

Synonym: Cmaq_0065

Alternate gene names: 159040657

Gene position: 80807-79548 (Counterclockwise)

Preceding gene: 159040658

Following gene: 159040656

Centisome position: 3.89

GC content: 44.6

Gene sequence:

>1260_bases
ATGATAATCAACAGCAAAGCTTTAATTAAACCTAAACCATACTTAATAGTGCTCACTCAAACGCACGTGCAGGTTGGTAT
TGTTGGGAAGCCTAATGCCGGGAAGTCAACCTTCTTCGCTGCATCAACCTTAATTGATGTTAAGATTGCGCCTTACCCAT
TCACTACAATTGAACCTAACGTGGGTGTGGGTTATGTTACAATACCATGTGTTTGCAGGGACCTTGGGGTTAAGGACAAT
CCAAGGAATTCAATATGCATGGATGGGACTAGGTTAATTCCAGTGGAGTTAATTGATGTGGCAGGCCTAGTACCTGGTGC
ATGGCAGGGTAGGGGTCTTGGCAACCAATTCCTAGACCACCTCAGGAGGGCGCCTGTACTGATTCATGTTGTTGACGCCT
CAGGTGGTACTGATGAGGAGGGTAGGATTGTTAAGCCTGGTACTCATGATCCCCTACTTGATGTTAAGTTCCTTGAGAAT
GAGGTCGACATGTGGATGCTTCAGATAGTTAAGAAGGAGTGGGATAAGGTGGTTAGACAGGTGGAGTACTCTAAGCAGAA
GATCGAGGATGTACTCTACAGTATGTTAAGTGGATTAGGCATAACTAGGGCTATTATTGAGGAGGCTTTGACTCAATTAT
CATTAATTAATAAGCAACCGCATTTATGGGGTGAGGAGGCTATTATGGGTCTTGTAAAGTATATTAGATCCATCGGTAAG
CCCATGGTTATTGCAGCCAATAAGGCTGATATACCTGAGGCTGAGGATAACATAAAGAGGATGATTAATGAACTTAAGGG
GTATAGGGTAATACCAACTAGTGCTGATGCCGAGTTAGCGTTGAGGAGAGCGGCCAATAAGGGTTTAATAAAGTACATTC
CCGGGGATCAAGACTTCACAATAGTAGGTAACCTAATGCCTGAGCAGGTTAAGGCCCTTGAGAGAATTAGGTCAATTATG
AGGAAATGGGGTGGAACCGGGGTTGTTAAGGCCCTTAACACAGCGGTGTTTGATGTGTTAGGCATGATAGCTGTTTACCC
AGTGGCCGATGAGAAGAGGCTAACTGACACTGAGGGTAGGGTCCTACCTGACGTATACCTGCTTCCCAGGAACGCAACTG
TACTTGACTTAGCATCAGCAATACACAGTGATATTGCTAAGAGGGCTATGTTTGCTGTAGATGCCTTAAGTGGTAGGAGG
ATTGGCCTTAATGAGAGGCTTCAGCATAGATCTATTGTAAGAATTGTGACCACTAGGTGA

Upstream 100 bases:

>100_bases
AATGAGAAGCAATACTTAAATAAATCACCTCATCGACTTAAGGTAATCATGCGGAGAAGGCTGGGGCTGAGTTAGTGATG
ATTATTCAGCCGCCTAAGTT

Downstream 100 bases:

>100_bases
GGTACTAATTATAGGGCTAAGTGACTGAAATTAAACGTAGTATTATGGTAACTATTCTATCTATTACCTAAATTATTAGG
CTGATTAACCGTTAATTCAC

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MIINSKALIKPKPYLIVLTQTHVQVGIVGKPNAGKSTFFAASTLIDVKIAPYPFTTIEPNVGVGYVTIPCVCRDLGVKDN
PRNSICMDGTRLIPVELIDVAGLVPGAWQGRGLGNQFLDHLRRAPVLIHVVDASGGTDEEGRIVKPGTHDPLLDVKFLEN
EVDMWMLQIVKKEWDKVVRQVEYSKQKIEDVLYSMLSGLGITRAIIEEALTQLSLINKQPHLWGEEAIMGLVKYIRSIGK
PMVIAANKADIPEAEDNIKRMINELKGYRVIPTSADAELALRRAANKGLIKYIPGDQDFTIVGNLMPEQVKALERIRSIM
RKWGGTGVVKALNTAVFDVLGMIAVYPVADEKRLTDTEGRVLPDVYLLPRNATVLDLASAIHSDIAKRAMFAVDALSGRR
IGLNERLQHRSIVRIVTTR

Sequences:

>Translated_419_residues
MIINSKALIKPKPYLIVLTQTHVQVGIVGKPNAGKSTFFAASTLIDVKIAPYPFTTIEPNVGVGYVTIPCVCRDLGVKDN
PRNSICMDGTRLIPVELIDVAGLVPGAWQGRGLGNQFLDHLRRAPVLIHVVDASGGTDEEGRIVKPGTHDPLLDVKFLEN
EVDMWMLQIVKKEWDKVVRQVEYSKQKIEDVLYSMLSGLGITRAIIEEALTQLSLINKQPHLWGEEAIMGLVKYIRSIGK
PMVIAANKADIPEAEDNIKRMINELKGYRVIPTSADAELALRRAANKGLIKYIPGDQDFTIVGNLMPEQVKALERIRSIM
RKWGGTGVVKALNTAVFDVLGMIAVYPVADEKRLTDTEGRVLPDVYLLPRNATVLDLASAIHSDIAKRAMFAVDALSGRR
IGLNERLQHRSIVRIVTTR
>Mature_419_residues
MIINSKALIKPKPYLIVLTQTHVQVGIVGKPNAGKSTFFAASTLIDVKIAPYPFTTIEPNVGVGYVTIPCVCRDLGVKDN
PRNSICMDGTRLIPVELIDVAGLVPGAWQGRGLGNQFLDHLRRAPVLIHVVDASGGTDEEGRIVKPGTHDPLLDVKFLEN
EVDMWMLQIVKKEWDKVVRQVEYSKQKIEDVLYSMLSGLGITRAIIEEALTQLSLINKQPHLWGEEAIMGLVKYIRSIGK
PMVIAANKADIPEAEDNIKRMINELKGYRVIPTSADAELALRRAANKGLIKYIPGDQDFTIVGNLMPEQVKALERIRSIM
RKWGGTGVVKALNTAVFDVLGMIAVYPVADEKRLTDTEGRVLPDVYLLPRNATVLDLASAIHSDIAKRAMFAVDALSGRR
IGLNERLQHRSIVRIVTTR

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=319, Percent_Identity=27.5862068965517, Blast_Score=80, Evalue=4e-15,
Organism=Escherichia coli, GI1787454, Length=216, Percent_Identity=31.0185185185185, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789574, Length=124, Percent_Identity=39.5161290322581, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6321649, Length=371, Percent_Identity=38.544474393531, Blast_Score=232, Evalue=1e-61,
Organism=Saccharomyces cerevisiae, GI6321773, Length=276, Percent_Identity=31.1594202898551, Blast_Score=74, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6319499, Length=191, Percent_Identity=29.8429319371728, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24640873, Length=246, Percent_Identity=30.4878048780488, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24640877, Length=246, Percent_Identity=30.4878048780488, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24640875, Length=246, Percent_Identity=30.4878048780488, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24585318, Length=148, Percent_Identity=35.8108108108108, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 46303; Mature: 46303

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIINSKALIKPKPYLIVLTQTHVQVGIVGKPNAGKSTFFAASTLIDVKIAPYPFTTIEPN
CEECCCCEECCCCEEEEEEECCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCCCEECCC
VGVGYVTIPCVCRDLGVKDNPRNSICMDGTRLIPVELIDVAGLVPGAWQGRGLGNQFLDH
CCCCEEEHHHHHHHCCCCCCCCCCEEECCCEECHHHHHHHHCCCCCCCCCCCCCHHHHHH
LRRAPVLIHVVDASGGTDEEGRIVKPGTHDPLLDVKFLENEVDMWMLQIVKKEWDKVVRQ
HHCCCEEEEEEECCCCCCCCCEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
VEYSKQKIEDVLYSMLSGLGITRAIIEEALTQLSLINKQPHLWGEEAIMGLVKYIRSIGK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
PMVIAANKADIPEAEDNIKRMINELKGYRVIPTSADAELALRRAANKGLIKYIPGDQDFT
CEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCEEEECCCCCCEE
IVGNLMPEQVKALERIRSIMRKWGGTGVVKALNTAVFDVLGMIAVYPVADEKRLTDTEGR
EECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCC
VLPDVYLLPRNATVLDLASAIHSDIAKRAMFAVDALSGRRIGLNERLQHRSIVRIVTTR
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEEECC
>Mature Secondary Structure
MIINSKALIKPKPYLIVLTQTHVQVGIVGKPNAGKSTFFAASTLIDVKIAPYPFTTIEPN
CEECCCCEECCCCEEEEEEECCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCCCEECCC
VGVGYVTIPCVCRDLGVKDNPRNSICMDGTRLIPVELIDVAGLVPGAWQGRGLGNQFLDH
CCCCEEEHHHHHHHCCCCCCCCCCEEECCCEECHHHHHHHHCCCCCCCCCCCCCHHHHHH
LRRAPVLIHVVDASGGTDEEGRIVKPGTHDPLLDVKFLENEVDMWMLQIVKKEWDKVVRQ
HHCCCEEEEEEECCCCCCCCCEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
VEYSKQKIEDVLYSMLSGLGITRAIIEEALTQLSLINKQPHLWGEEAIMGLVKYIRSIGK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
PMVIAANKADIPEAEDNIKRMINELKGYRVIPTSADAELALRRAANKGLIKYIPGDQDFT
CEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCEEEECCCCCCEE
IVGNLMPEQVKALERIRSIMRKWGGTGVVKALNTAVFDVLGMIAVYPVADEKRLTDTEGR
EECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCC
VLPDVYLLPRNATVLDLASAIHSDIAKRAMFAVDALSGRRIGLNERLQHRSIVRIVTTR
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]