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The map label for this gene is 159040617

Identifier: 159040617

GI number: 159040617

Start: 39036

End: 39458

Strand: Reverse

Name: 159040617

Synonym: Cmaq_0025

Alternate gene names: NA

Gene position: 39458-39036 (Counterclockwise)

Preceding gene: 159040619

Following gene: 159040616

Centisome position: 1.9

GC content: 43.03

Gene sequence:

>423_bases
ATGGCTTTTGGTGAAGGAGCAAGGCGATTCAACGCGGAGGTAATGGGTATGTTAGGTAGGAAGGTTCTAGTTAACCTCAT
AGGTGGCTCATTCTACAGGGGGCAATTAGTCGGTATAGATCAGGGATTAAATATTGTCCTAGTTGACGTTACCAATGATA
GGAATGAAAGGTTCCCTAAGGTTTTAATTAAATCAGAGGCAATTAGGGATATTGCCCTAGTGGAGGAGTACATTGACTTA
AGGGAGTTGGCGAAAATACTTGAGAAGTACTTCCCAGGAATGGTGAAGTACATTGAGGAAACCAATACCATAATAGTGAG
CGAGAACGTTACTGTTACCGAGGAGGGTGTTAAGGGAACTGGATTAGTGGCTAGGAGGGTTAAGGAGATTTACGATGAAT
ACGTCCAATCGAGGAAGAGGTAA

Upstream 100 bases:

>100_bases
TCATACTCAATCCCCGTAACCTTATACGTACCTCTATACTCGTACATAGGTGGGTTTATACTATTAGAGTTTAAAAAGGC
CACTGCATAAGTCCACTGGT

Downstream 100 bases:

>100_bases
TGTTTGAGGTAATAGAGAAGGATGAGATAGCTAGGATTGGTAAACTGTACACTAGGCATGGTGTAATAGAGACTCCTGCA
TTATTCCCTGTAATAAACCC

Product: like-Sm ribonucleoprotein core

Products: NA

Alternate protein names: Small Nuclear Ribonucleoprotein Homolog; Small Nuclear Ribonucleoprotein

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MAFGEGARRFNAEVMGMLGRKVLVNLIGGSFYRGQLVGIDQGLNIVLVDVTNDRNERFPKVLIKSEAIRDIALVEEYIDL
RELAKILEKYFPGMVKYIEETNTIIVSENVTVTEEGVKGTGLVARRVKEIYDEYVQSRKR

Sequences:

>Translated_140_residues
MAFGEGARRFNAEVMGMLGRKVLVNLIGGSFYRGQLVGIDQGLNIVLVDVTNDRNERFPKVLIKSEAIRDIALVEEYIDL
RELAKILEKYFPGMVKYIEETNTIIVSENVTVTEEGVKGTGLVARRVKEIYDEYVQSRKR
>Mature_139_residues
AFGEGARRFNAEVMGMLGRKVLVNLIGGSFYRGQLVGIDQGLNIVLVDVTNDRNERFPKVLIKSEAIRDIALVEEYIDLR
ELAKILEKYFPGMVKYIEETNTIIVSENVTVTEEGVKGTGLVARRVKEIYDEYVQSRKR

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15886; Mature: 15754

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGEGARRFNAEVMGMLGRKVLVNLIGGSFYRGQLVGIDQGLNIVLVDVTNDRNERFPK
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCHHHHH
VLIKSEAIRDIALVEEYIDLRELAKILEKYFPGMVKYIEETNTIIVSENVTVTEEGVKGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCEEEEECCEEEECCCCCCC
GLVARRVKEIYDEYVQSRKR
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFGEGARRFNAEVMGMLGRKVLVNLIGGSFYRGQLVGIDQGLNIVLVDVTNDRNERFPK
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCHHHHH
VLIKSEAIRDIALVEEYIDLRELAKILEKYFPGMVKYIEETNTIIVSENVTVTEEGVKGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCEEEEECCEEEECCCCCCC
GLVARRVKEIYDEYVQSRKR
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA