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The map label for this gene is 15899938

Identifier: 15899938

GI number: 15899938

Start: 2984344

End: 2984802

Strand: Direct

Name: 15899938

Synonym: SSO3240

Alternate gene names: NA

Gene position: 2984344-2984802 (Clockwise)

Preceding gene: 15899937

Following gene: 15899939

Centisome position: 99.74

GC content: 34.64

Gene sequence:

>459_bases
ATGCAAAGACATGTTATGTCATCTAAAGACTCTAAGATTTTTATCAACAAGATAAAAGAGAAGTATAATGTTGATATTTC
TAATGCTAAATTAGAGGTAGGTAAGGAGAAAAAGGAGATATGGTATTATGTAAACGATATTTTAGCATTTTTCGATGACC
TAATTCCTACACTTTGTGCAATAATCAGGTTAAAAATCAATCTCCCTTATGTAATTATAGATGAGGGAGCTGTAAAAGCT
GTGAGTAAAGGAGCTGATCTTTTCGCCCCAGGTATAGTAGAATATAACTGCGAATGTAAGGAGAATGAGATTGTTTTAGC
GAAGACCAAGACAAATTTACCTGTTGCAGTATTAAGAGTTCTAATGCCAAAGGAGAAGGCTTTAGTTGAAAAGAAGGGAA
AGTTCGCCCTTAATCTCCACCATATTGGGGATAAGATATGGGAGATGTGTAATGGGTAA

Upstream 100 bases:

>100_bases
AGCTATTGCCTCAACTCCTGCTGTAGTAAATGCAGTAGAAAAGTGCATTAGGAAGAAAATAGTTAACATGCCGATAAGAC
CAGAAGAGGTTATTTAACTC

Downstream 100 bases:

>100_bases
CTTTTCTATTGTTATACCCACTTATAATGAGAGAGACAATATTGTAAAACTAGTAGAGGAGATAAATAGGATAGTACCAT
ATAATTCCAGAATTCTTATA

Product: putative RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MQRHVMSSKDSKIFINKIKEKYNVDISNAKLEVGKEKKEIWYYVNDILAFFDDLIPTLCAIIRLKINLPYVIIDEGAVKA
VSKGADLFAPGIVEYNCECKENEIVLAKTKTNLPVAVLRVLMPKEKALVEKKGKFALNLHHIGDKIWEMCNG

Sequences:

>Translated_152_residues
MQRHVMSSKDSKIFINKIKEKYNVDISNAKLEVGKEKKEIWYYVNDILAFFDDLIPTLCAIIRLKINLPYVIIDEGAVKA
VSKGADLFAPGIVEYNCECKENEIVLAKTKTNLPVAVLRVLMPKEKALVEKKGKFALNLHHIGDKIWEMCNG
>Mature_152_residues
MQRHVMSSKDSKIFINKIKEKYNVDISNAKLEVGKEKKEIWYYVNDILAFFDDLIPTLCAIIRLKINLPYVIIDEGAVKA
VSKGADLFAPGIVEYNCECKENEIVLAKTKTNLPVAVLRVLMPKEKALVEKKGKFALNLHHIGDKIWEMCNG

Specific function: Unknown

COG id: COG2016

COG function: function code J; Predicted RNA-binding protein (contains PUA domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17280; Mature: 17280

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRHVMSSKDSKIFINKIKEKYNVDISNAKLEVGKEKKEIWYYVNDILAFFDDLIPTLCA
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
IIRLKINLPYVIIDEGAVKAVSKGADLFAPGIVEYNCECKENEIVLAKTKTNLPVAVLRV
HHHHCCCCCEEEECCCHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHH
LMPKEKALVEKKGKFALNLHHIGDKIWEMCNG
HCCCHHHHHHCCCCEEEEHHHHHHHHHHHHCC
>Mature Secondary Structure
MQRHVMSSKDSKIFINKIKEKYNVDISNAKLEVGKEKKEIWYYVNDILAFFDDLIPTLCA
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
IIRLKINLPYVIIDEGAVKAVSKGADLFAPGIVEYNCECKENEIVLAKTKTNLPVAVLRV
HHHHCCCCCEEEECCCHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHH
LMPKEKALVEKKGKFALNLHHIGDKIWEMCNG
HCCCHHHHHHCCCCEEEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA