Click here to switch to the map view.

The map label for this gene is yjgF [C]

Identifier: 15899908

GI number: 15899908

Start: 2952434

End: 2952814

Strand: Direct

Name: yjgF [C]

Synonym: SSO3206

Alternate gene names: 15899908

Gene position: 2952434-2952814 (Clockwise)

Preceding gene: 15899907

Following gene: 15899912

Centisome position: 98.67

GC content: 33.6

Gene sequence:

>381_bases
ATGAAGGAAATAATTTTCACGGAGAAAGCTCCTAAGCCAATAGGTCCATACTCTCAAGGAGTGAAGGTTGGAGATATACT
TTACGTATCAGGACAAATTCCAGTAGATCCTAAAACTAACGAAGTAGTAGGCAAAAACATAGAAGAACAGACAATTAGGG
TTATTGAAAACATAAAAGCTGTTCTAGAAGCAGCAGGTTATATGTTAGATGACGTAGTAATGTCCTTTGTTTATCTAAAA
GATATAAAGGACTTTCAAAGATTTAATGAAGTTTATTCGAAATATTTCAGTAATAAACCTCCCGCGAGAGTTACTGTAGA
AGTTTCAAGATTACCAAGAGACGTATTAATAGAAATAACTGTTATAGCTCAGAAGAGTTAA

Upstream 100 bases:

>100_bases
TATAATCACTGAAAGAGATTTGTTAATAGCTTTACATCATATTCTTGTTATGGAGAAATTTAAGGAAAAACTTTAAACTA
TTTTCGATTTAGTAATTCAC

Downstream 100 bases:

>100_bases
GAAAAAATCTTTTTCAATAGCTTTTCTACGTGTGGACAATCCAGATCGAATAGATTATGATTCCCGTGTTCAACGCAGCT
TGCTTGGATTGGTTTACCTT

Product: protein synthesis inhibitor, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKEIIFTEKAPKPIGPYSQGVKVGDILYVSGQIPVDPKTNEVVGKNIEEQTIRVIENIKAVLEAAGYMLDDVVMSFVYLK
DIKDFQRFNEVYSKYFSNKPPARVTVEVSRLPRDVLIEITVIAQKS

Sequences:

>Translated_126_residues
MKEIIFTEKAPKPIGPYSQGVKVGDILYVSGQIPVDPKTNEVVGKNIEEQTIRVIENIKAVLEAAGYMLDDVVMSFVYLK
DIKDFQRFNEVYSKYFSNKPPARVTVEVSRLPRDVLIEITVIAQKS
>Mature_126_residues
MKEIIFTEKAPKPIGPYSQGVKVGDILYVSGQIPVDPKTNEVVGKNIEEQTIRVIENIKAVLEAAGYMLDDVVMSFVYLK
DIKDFQRFNEVYSKYFSNKPPARVTVEVSRLPRDVLIEITVIAQKS

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=40.650406504065, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=46.8253968253968, Blast_Score=116, Evalue=4e-28,
Organism=Escherichia coli, GI87082213, Length=129, Percent_Identity=43.4108527131783, Blast_Score=113, Evalue=5e-27,
Organism=Escherichia coli, GI1787245, Length=123, Percent_Identity=30.0813008130081, Blast_Score=82, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=41.8032786885246, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=41.8032786885246, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=41.8032786885246, Blast_Score=104, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6322138, Length=119, Percent_Identity=41.1764705882353, Blast_Score=94, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=105, Percent_Identity=44.7619047619048, Blast_Score=88, Evalue=4e-19,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=40.650406504065, Blast_Score=99, Evalue=7e-22,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): Y3206_SULSO (Q97U19)

Other databases:

- EMBL:   AE006641
- PIR:   H90505
- RefSeq:   NP_344513.1
- ProteinModelPortal:   Q97U19
- SMR:   Q97U19
- GeneID:   1453222
- GenomeReviews:   AE006641_GR
- KEGG:   sso:SSO3206
- NMPDR:   fig|273057.1.peg.2936
- HOGENOM:   HBG695954
- OMA:   IEVIAYK
- PhylomeDB:   Q97U19
- ProtClustDB:   CLSK2484617
- BioCyc:   SSOL273057:SSO3206-MONOMER
- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897
- Gene3D:   G3DSA:3.30.1330.40
- PANTHER:   PTHR11803
- TIGRFAMs:   TIGR00004

Pfam domain/function: PF01042 Ribonuc_L-PSP; SSF55298 YjgF/chorismate_mutase-like

EC number: NA

Molecular weight: Translated: 14250; Mature: 14250

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIIFTEKAPKPIGPYSQGVKVGDILYVSGQIPVDPKTNEVVGKNIEEQTIRVIENIKA
CCCCCCCCCCCCCCCCCCCCCEECEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH
VLEAAGYMLDDVVMSFVYLKDIKDFQRFNEVYSKYFSNKPPARVTVEVSRLPRDVLIEIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHEEEEE
VIAQKS
EEEECC
>Mature Secondary Structure
MKEIIFTEKAPKPIGPYSQGVKVGDILYVSGQIPVDPKTNEVVGKNIEEQTIRVIENIKA
CCCCCCCCCCCCCCCCCCCCCEECEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH
VLEAAGYMLDDVVMSFVYLKDIKDFQRFNEVYSKYFSNKPPARVTVEVSRLPRDVLIEIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHEEEEE
VIAQKS
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726