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The map label for this gene is ydcM [C]

Identifier: 15899876

GI number: 15899876

Start: 2919359

End: 2920627

Strand: Direct

Name: ydcM [C]

Synonym: SSO3172

Alternate gene names: 15899876

Gene position: 2919359-2920627 (Clockwise)

Preceding gene: 15899875

Following gene: 15899877

Centisome position: 97.56

GC content: 43.42

Gene sequence:

>1269_bases
GTGCTGAAGAACTTAAGAATTAGAAAATTTGAACCGGAAGAGGAATACGTGCACTTCACGTACTCCATCAAGAATAGTGA
GAGGGAGAAGAGCAAAGAGTTAATTAAAGAATACAGAACACTACTACAGAAAGCAATTGACTACCTGTGGAATTTAACGA
AAATACAAGTAAGAAAAAAGAACGGTAGTTACAAGATAACACTACCGAAGAAGAAGGAAGTATACAAACCACTTAGGGAA
GAGTTGGAGAAGATCAACCACCTCGCGTCACACTACGTCGATAAGGCAATTAATGACGCATTCTCGATCTTGAAGTCGTG
GAGGAAAAGGGCCATAAAGGGGAGAGCTTCGATTGAAAAACCTACGTTAAAGAAGGCTTACGTTAGGATAAAGACGACTC
TGAGGAAGGTTGTGGGGGAAAGCGTTAGAATAACGGTAAGACCTTATGAGTACATCACCTTCTCGTGGAGTAAGTCATGG
TTCTCAAGAAGGGTTAGGGAGTTGGAACTCGGCGAACCTATAATTAAGGAGGAGAAGGTTTACCTACCATTTCGTTACAA
GTTACCGTGGGTAACACCAGTGAACTTTCTAGCTATTGACTCCAACCTTTATACTCTAGATGCTTATGATGGTGAGAAAT
TCGTTACAATCTCCCTAAAGCAGTTGTACTCCCTTAAGTACTCCATGGAGGTGAAGAGGGCTAAGGTGCAATCATTTGCA
TCAAAGCACACGAAGAGGGGGAGAGAGTTGATGAGGAAGTATTCGCATAGGGAGAGGAATCGCGTTCTAGATTTTGTTCA
CAAGTTTGTTAACACTTTGTTGGACTTGTACCCCATGACGTTTTTCGCTGTGGAAAAGCTTAACAAAGAGAGTATGTTTA
AGGATGCTAATGGCTCTCTTTCGAGGAAGATTTCTAGGACTGTTTGGAGGAGTATACACAGAGTGTTGAAGTATAAGGCT
CCGCTTTACGGTTCTTTCGTTAAGGAAGTGAACCCACACCTCACCTCGAGGTCTTGCCCCAGATGTGGGTTTGTATCCCG
AAAGGTTGGTAAGACCTTTGAGTGTGAGAGGTGTGGGTTCAAGTTGGATAGACAACTGAACGCGTCATTGAATATTTATC
TCAAGATGTGCGGTTTTCCTCACATCCGTGATATTCCGCGGGTGTGGGTTGGGGTTATTCCGCTAATGGGGCGGAGAGGG
ATGAACGTCCGCGACTTTGGTGAAGCCCAAGGGCTGAGGATTGATATCAAATATCATGAAATCCTATGA

Upstream 100 bases:

>100_bases
AAAGAGGAAGAACTAGTTGAAGACCTAATGTCAGTACTAGTCTCGTTCAGCGGGAAACTGTATGGTATGAGGAGTCATGA
ATACGAGAAGGTGAAGAAAT

Downstream 100 bases:

>100_bases
AGCCCAAACCCCTTACGATAAATGGGATAGGGCAGAAGAAATTAGGGTTCCCGCTTGGCATGATGTTATATGATATTTCC
TTTTTTAGAGAAAAAATAAA

Product: second ORF in transposon ISC1778

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MLKNLRIRKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKKNGSYKITLPKKKEVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPTLKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSW
FSRRVRELELGEPIIKEEKVYLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANGSLSRKISRTVWRSIHRVLKYKA
PLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRG
MNVRDFGEAQGLRIDIKYHEIL

Sequences:

>Translated_422_residues
MLKNLRIRKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKKNGSYKITLPKKKEVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPTLKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSW
FSRRVRELELGEPIIKEEKVYLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANGSLSRKISRTVWRSIHRVLKYKA
PLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRG
MNVRDFGEAQGLRIDIKYHEIL
>Mature_422_residues
MLKNLRIRKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKKNGSYKITLPKKKEVYKPLRE
ELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPTLKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSW
FSRRVRELELGEPIIKEEKVYLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANGSLSRKISRTVWRSIHRVLKYKA
PLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRG
MNVRDFGEAQGLRIDIKYHEIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 50147; Mature: 50147

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNLRIRKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKK
CCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
NGSYKITLPKKKEVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEK
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PTLKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWFSRRVRELELGEPIIKEEKV
CHHHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEECCHHHHHHHHHHHHCCCCCCCCCEE
YLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
EEEEEECCCCCCCCEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANGSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHH
SRKISRTVWRSIHRVLKYKAPLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCC
KLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRGMNVRDFGEAQGLRIDIKYHE
CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECC
IL
CC
>Mature Secondary Structure
MLKNLRIRKFEPEEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKK
CCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
NGSYKITLPKKKEVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEK
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PTLKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWFSRRVRELELGEPIIKEEKV
CHHHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEECCHHHHHHHHHHHHCCCCCCCCCEE
YLPFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFA
EEEEEECCCCCCCCEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
SKHTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDANGSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHH
SRKISRTVWRSIHRVLKYKAPLYGSFVKEVNPHLTSRSCPRCGFVSRKVGKTFECERCGF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCC
KLDRQLNASLNIYLKMCGFPHIRDIPRVWVGVIPLMGRRGMNVRDFGEAQGLRIDIKYHE
CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECC
IL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]