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The map label for this gene is 15899136

Identifier: 15899136

GI number: 15899136

Start: 2169762

End: 2170484

Strand: Direct

Name: 15899136

Synonym: SSO2383

Alternate gene names: NA

Gene position: 2169762-2170484 (Clockwise)

Preceding gene: 15899135

Following gene: 15899137

Centisome position: 72.51

GC content: 35.96

Gene sequence:

>723_bases
GTGAAATTTATGTCAGGAAAATTCTGTGTATTATGCGGAAAGCAAAATGTTGACCTAATAGATTCGCTATGTGTAGATTG
CTATGTAAAGTCTAAAAAATTGATAGAGACGCCTAAAAGGGTAACCGGAAAGTATTGTAAGATCTGCGGTGCCCAGTGGA
TTAGAGGTAAGTGGATAAGAACATCAGCAACATCATTAGCTTCCGTAGTGGAGGATATTATAGCAAGAGAATTAGGGAGT
AAGATGAGGATTGACAAAAACGTGGATGAGTTCGCATTTGATATAAAGAGCATATGGAAGGATCCAAGTGGTAATTCTTT
TGCGACTATTGAGTTTAGAGGTAAGGTAAGAGGTAAATCATTTTCCCAAGAAGCTGTAATAAGCTTAGAAATGGAAAGGG
AGCTGTGTGACTCATGTTTTAGGAAGAAGACACGATATTATGAGGCTATAGTTCAACTTAGGAGTAAAGGTAAGATTGGA
GTCGATGATAAAAAGAGAGCGTTCTTCGAATCCTTTTTCTCTACAAGTATTGTAGATAATATTTCCGATGTTATTGAAGG
TAGAGAGGGTGTTGATTATTATTTTATGAGTAAAAGTGTTGCAAGAAAGCTTGTATCGATGATATCTTCTATTGTGGACG
TTGAAGTTAATGAGAGTTATCAGAATGAAAAGATGAAAAACGGTAAAAGGGAGGCAAAACTAGTTATTTCATTGAGGATA
TGA

Upstream 100 bases:

>100_bases
TAGGGAATTATGCGGTAGAAGAGGCAATAAGGAGAGGGTTAGTACATAAGGACTCAGTGATCAATGTGGCTGGTATAAAA
TTTGCTCAAGTTTATAATGT

Downstream 100 bases:

>100_bases
GAGTAGGCATAGATGAAGCAGGTCGTGGAGCGTTAATAGGTCCAATGATAGTTGCAGGTGTAGTTATAAGTGATACGAAA
CTAAAGTTCCTTAAAGGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NMD Protein Affecting Ribosome Stability And MRNA Decay; NMD3-Related Protein; Nonsense Mediated MRNA Decay Protein; Nonsense-Mediated MRNA Decay Protein NMD3-Like Protein; Nmd3 Family Protein; Nonsense MRNA Decay Protein; Nonsense Mediated MRNA Decay

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MKFMSGKFCVLCGKQNVDLIDSLCVDCYVKSKKLIETPKRVTGKYCKICGAQWIRGKWIRTSATSLASVVEDIIARELGS
KMRIDKNVDEFAFDIKSIWKDPSGNSFATIEFRGKVRGKSFSQEAVISLEMERELCDSCFRKKTRYYEAIVQLRSKGKIG
VDDKKRAFFESFFSTSIVDNISDVIEGREGVDYYFMSKSVARKLVSMISSIVDVEVNESYQNEKMKNGKREAKLVISLRI

Sequences:

>Translated_240_residues
MKFMSGKFCVLCGKQNVDLIDSLCVDCYVKSKKLIETPKRVTGKYCKICGAQWIRGKWIRTSATSLASVVEDIIARELGS
KMRIDKNVDEFAFDIKSIWKDPSGNSFATIEFRGKVRGKSFSQEAVISLEMERELCDSCFRKKTRYYEAIVQLRSKGKIG
VDDKKRAFFESFFSTSIVDNISDVIEGREGVDYYFMSKSVARKLVSMISSIVDVEVNESYQNEKMKNGKREAKLVISLRI
>Mature_240_residues
MKFMSGKFCVLCGKQNVDLIDSLCVDCYVKSKKLIETPKRVTGKYCKICGAQWIRGKWIRTSATSLASVVEDIIARELGS
KMRIDKNVDEFAFDIKSIWKDPSGNSFATIEFRGKVRGKSFSQEAVISLEMERELCDSCFRKKTRYYEAIVQLRSKGKIG
VDDKKRAFFESFFSTSIVDNISDVIEGREGVDYYFMSKSVARKLVSMISSIVDVEVNESYQNEKMKNGKREAKLVISLRI

Specific function: Unknown

COG id: COG1499

COG function: function code J; NMD protein affecting ribosome stability and mRNA decay

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27387; Mature: 27387

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFMSGKFCVLCGKQNVDLIDSLCVDCYVKSKKLIETPKRVTGKYCKICGAQWIRGKWIR
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEH
TSATSLASVVEDIIARELGSKMRIDKNVDEFAFDIKSIWKDPSGNSFATIEFRGKVRGKS
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
FSQEAVISLEMERELCDSCFRKKTRYYEAIVQLRSKGKIGVDDKKRAFFESFFSTSIVDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ISDVIEGREGVDYYFMSKSVARKLVSMISSIVDVEVNESYQNEKMKNGKREAKLVISLRI
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEEEEEC
>Mature Secondary Structure
MKFMSGKFCVLCGKQNVDLIDSLCVDCYVKSKKLIETPKRVTGKYCKICGAQWIRGKWIR
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEH
TSATSLASVVEDIIARELGSKMRIDKNVDEFAFDIKSIWKDPSGNSFATIEFRGKVRGKS
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
FSQEAVISLEMERELCDSCFRKKTRYYEAIVQLRSKGKIGVDDKKRAFFESFFSTSIVDN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ISDVIEGREGVDYYFMSKSVARKLVSMISSIVDVEVNESYQNEKMKNGKREAKLVISLRI
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA