Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 15898496

GI number: 15898496

Start: 1535774

End: 1536145

Strand: Direct

Name: ydcM [C]

Synonym: SSO1682

Alternate gene names: 15898496

Gene position: 1535774-1536145 (Clockwise)

Preceding gene: 15898495

Following gene: 15898500

Centisome position: 51.33

GC content: 38.98

Gene sequence:

>372_bases
GTGAAGAACTTGAGGAGAGATATTTACATGAAGCTCGGTAAGTATTTTGCAGAACACTACGATACCGTGGTAATGGAGGA
TATTAACGTTAAGAAGCTGGTTGGTAAGTCTCTCAAGGTAATGAGGAGGAGGCTTCACGATATTGGTTTTTACGAGTTTA
GGACGATACTGGAGTATCAACTAATAAAATACGGTAAGAAGTTCACCCTCGTCGATCCAGCATACACGTCGATGACTTGT
GCTAGATGCGGATACGTTAGGGAAGATTTAACGGGAGTGTTCTCATGCAGTCATCTTATTCGATATCATATAGTAAAATT
ATATCAAGTTCTCTCTAATATACTGTACTCCCTTCAAGTAAGTCTCATTTAA

Upstream 100 bases:

>100_bases
ACATAAAACTTATCAACTTGATTAATTGATTCCTTGTTATCACTATTTATAAGAAACTTATTAATGAGTTATAAAGTATA
ACAAATTTCTGGAAACAGTA

Downstream 100 bases:

>100_bases
GGGAGTTCCCTCCCTTGAAAATACGTGAGGGTACATTACATTCAACAAGGCCAAACTGTACTCCGTCATCCTCATACTCC
TAGTAACAGCTTTAGTATCC

Product: partial transposase in ISC1316

Products: NA

Alternate protein names: Transposase ISC; Second ORF In Transposon ISC; Partial Transposase In ISC

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKNLRRDIYMKLGKYFAEHYDTVVMEDINVKKLVGKSLKVMRRRLHDIGFYEFRTILEYQLIKYGKKFTLVDPAYTSMTC
ARCGYVREDLTGVFSCSHLIRYHIVKLYQVLSNILYSLQVSLI

Sequences:

>Translated_123_residues
MKNLRRDIYMKLGKYFAEHYDTVVMEDINVKKLVGKSLKVMRRRLHDIGFYEFRTILEYQLIKYGKKFTLVDPAYTSMTC
ARCGYVREDLTGVFSCSHLIRYHIVKLYQVLSNILYSLQVSLI
>Mature_123_residues
MKNLRRDIYMKLGKYFAEHYDTVVMEDINVKKLVGKSLKVMRRRLHDIGFYEFRTILEYQLIKYGKKFTLVDPAYTSMTC
ARCGYVREDLTGVFSCSHLIRYHIVKLYQVLSNILYSLQVSLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14617; Mature: 14617

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLRRDIYMKLGKYFAEHYDTVVMEDINVKKLVGKSLKVMRRRLHDIGFYEFRTILEYQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LIKYGKKFTLVDPAYTSMTCARCGYVREDLTGVFSCSHLIRYHIVKLYQVLSNILYSLQV
HHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLI
HCC
>Mature Secondary Structure
MKNLRRDIYMKLGKYFAEHYDTVVMEDINVKKLVGKSLKVMRRRLHDIGFYEFRTILEYQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LIKYGKKFTLVDPAYTSMTCARCGYVREDLTGVFSCSHLIRYHIVKLYQVLSNILYSLQV
HHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLI
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA