Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 15898328

GI number: 15898328

Start: 1351270

End: 1352472

Strand: Direct

Name: ydcM [C]

Synonym: SSO1498

Alternate gene names: 15898328

Gene position: 1351270-1352472 (Clockwise)

Preceding gene: 15898327

Following gene: 15898330

Centisome position: 45.16

GC content: 43.39

Gene sequence:

>1203_bases
GTGTTGAAGAACTTAAGAATTAGAAAATTTGAACCGGAAGAGAAATACGCATACTTCACGTACTCCATCAAGAACGACAA
GAGGGAGAAGAGCAAAGAATTAATTAAAGAATACAGAACACTACTACAGAAAGCAATTGACTACTTGTGGAATTTAACGA
AAATACAAGTAAGAAAGAACGGTAATTACAAGATAACACTACCGAAGAAGAGGGAGGTGTATAAACCACTTAGGGAAGAG
TTGGAGAAGATCAATCACCTCGCGTCACACTACGTCGATAAGGCAATTAATGACGCATTCTCGATCTTGAAGTCGTGGAG
GAAAAGGGCCATAAAGGGGAGGGCATCAATTGGAAAACCAAGGGTGAAGAAGGCTTACGTTAGGATAAAGACGACTCTGA
GGAAGGTTGTTGGGGAAAGCGTTAGAATAACGGTAAGACCTTATGAGTACATCACCTTCTCGTGGAGTAAGTCATGGTTC
TCAAGAAGGGTTAGGGAGTTGGAACTTGGTGAACCTGTAATTAAGGAGGAGAAAGTGTATTTGTCATTTCGTTACAAGTT
ACCTTGGGCAACACCAGTGAACTTCCTGGCCATTGACTCCAACCTTTATACTCTAGATGCTTATGATGGTGAGAAATTCG
TTACAATCTCTCTGAAGCAGTTGTACTCCCTTAAGTACTCCATGGAGGTGAAGAGGGCTAAGGTGCAATCGTTTGCATCT
AAGCACACGAAGAGGGGGAGAGAGTTGTTAAGGAAGTATTCACATAGGGAGAGGAATCGCGTTTTAGATTTTGTTCACAA
GTTTGTAAATGCGTTACTGGACTTGTACCCCATGACGTTTTTTGCTGTTGAAAAGCTTGATAAGGAGGGTATGTTTGTAG
ATGCTAATGAGTCTCTTTCGAGGAAGATTTCTTTAACGGTTTGGGGGAGTATACACAGAGTGTTGAGGTATAAGGCTCCG
CTTTACGGCTCCTTCGTGAAGGAAGTGAACCCACGCTTTACATCTAGGTCTTGCCCCAGATGTGGGTTTGTATCCCGAAA
GGTTGGTAAGACCTTTGAGTGTGAGAGGTGTGGGTTCAAGTTGGATAGGCAATTGAATGCTTCTCTAAACATATACCTCA
AGATGTGCGGATTCCCTCACATCCGTGAGGGTGGGGTTAGGGGTTATTCCGCTAATGGGGCGGAGAGGGATGAACGTCCG
TGA

Upstream 100 bases:

>100_bases
CCAGAACAGGAGATGATTGAAGACCTAATCTCCATTCTGTTCTCATTCAGCGGAAAACTGTATGGCATGAGAAGTCACAA
GTACGAAAAGGTGAAGAAAT

Downstream 100 bases:

>100_bases
CTTTGGTGAAGCCCAAGGGCTGAGGATTGGATACAAATTCATGAAAATTCAATGAAGCCCAAACCCCTCTTCCCTATTTT
ACTCATATAAAAAGTATAAG

Product: second ORF in transposon ISC1778

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MLKNLRIRKFEPEEKYAYFTYSIKNDKREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKNGNYKITLPKKREVYKPLREE
LEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIGKPRVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWF
SRRVRELELGEPVIKEEKVYLSFRYKLPWATPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFAS
KHTKRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGMFVDANESLSRKISLTVWGSIHRVLRYKAP
LYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIREGGVRGYSANGAERDERP

Sequences:

>Translated_400_residues
MLKNLRIRKFEPEEKYAYFTYSIKNDKREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKNGNYKITLPKKREVYKPLREE
LEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIGKPRVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWF
SRRVRELELGEPVIKEEKVYLSFRYKLPWATPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFAS
KHTKRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGMFVDANESLSRKISLTVWGSIHRVLRYKAP
LYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIREGGVRGYSANGAERDERP
>Mature_400_residues
MLKNLRIRKFEPEEKYAYFTYSIKNDKREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKNGNYKITLPKKREVYKPLREE
LEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIGKPRVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWF
SRRVRELELGEPVIKEEKVYLSFRYKLPWATPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFAS
KHTKRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGMFVDANESLSRKISLTVWGSIHRVLRYKAP
LYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIREGGVRGYSANGAERDERP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 47319; Mature: 47319

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNLRIRKFEPEEKYAYFTYSIKNDKREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKN
CCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
GNYKITLPKKREVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIGKP
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWFSRRVRELELGEPVIKEEKVY
HHHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEEECHHHHHHHHHHHHCCCCCCCCCEEE
LSFRYKLPWATPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFAS
EEEEEECCCCCCCEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
KHTKRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGMFVDANESLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
RKISLTVWGSIHRVLRYKAPLYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFK
CEEEEEEHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCCC
LDRQLNASLNIYLKMCGFPHIREGGVRGYSANGAERDERP
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKNLRIRKFEPEEKYAYFTYSIKNDKREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKN
CCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
GNYKITLPKKREVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIGKP
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWFSRRVRELELGEPVIKEEKVY
HHHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEEECHHHHHHHHHHHHCCCCCCCCCEEE
LSFRYKLPWATPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFAS
EEEEEECCCCCCCEEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
KHTKRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGMFVDANESLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
RKISLTVWGSIHRVLRYKAPLYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFK
CEEEEEEHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCCC
LDRQLNASLNIYLKMCGFPHIREGGVRGYSANGAERDERP
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]