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The map label for this gene is ydcM [C]

Identifier: 15898307

GI number: 15898307

Start: 1335113

End: 1336363

Strand: Direct

Name: ydcM [C]

Synonym: SSO1475

Alternate gene names: 15898307

Gene position: 1335113-1336363 (Clockwise)

Preceding gene: 15898306

Following gene: 15898313

Centisome position: 44.62

GC content: 41.17

Gene sequence:

>1251_bases
GTGAAGAGGAGTAACACTGTTAGGCTAGTAGTATCTAAAGAGCAACATGAAGTGTTAAAGAGGCTTGGTATAGCTACGGC
TAAGTGTTGGAATGAGGTTAATTGGTTAAGGATGAAACAGTACAAGGAAGGAAAGAGAGTAGATTTTGGAATTACAGAGA
AGGCAGTGTATGAAAAGTATAAGAGTGTGCTGAGGGTTAATGCGCAACAAGTAGCTAGGAAGAACGCCGAAGATTGGAGG
AGCTTCTTCTCATTAACCCGTGAGAAGAAAGAGGGAAAACTACCCAGTTGGTTTAAACCGAGACCACCGGGTTATTGGAA
AGATGGAAGATTAATCGTAATTATCAGAAATGATAGGTACACTGTGGATGAAAGGAATAGGGTGGTTTATCTTAAGGATT
TTAATCTCTCATTGAAGTTTAAGGGTAGGTTAAAGTGGCATGGGAAACAGGGTAGGCTGGAAATAATTTACGACGAGGCG
AGAAAGATCTGGTACGCACATATACCAGTTGAAGTTGAAACTGAGAAAGTTAAGGAAGGAATAAAGGCATCTATTGATTT
AGGTATTGTGAACCTAGCCACGGTTTATGTTGAGGACGGCTCGTGGTACTTATTCAAAGGTGGATCTGCTTTATCTCATT
ACGAGAACTACAGTAAGAGAATTACTATAGTTCAGAAGACTTTGCATAGACATAGGCAGAGGAGGAGTAGAAGGCTTAAG
TTGCTTCACGAGAAGAGGAGTAGGTTCCTCAAACACGCCTTGAACAGTATGGTGAGGAGGATAATGGAAATACTGAGGGA
GAAAAACGTTGGTGAGGTGGTTGTAGGTTATCCTAAAGAAATAGCTAAACATCATGGGAATAAGCTGACTGTTAACTTCT
GGAATTATTCGTATATAATAAAGAGGCTTGAGGATATTGGTGAGGAGTTGGGGATAAAAGTAATAACAGTGGACGAGGCA
TATACTTCTAAAACGTGTTCCTTGTGTGGGGAAGCCCATGAGGATGGACGTGTGAAAAGGGGATTATTTGTGTGTCCCCG
CACAAGGAAGGCAATAAATGCGGACTTAAACGGAGCAATAAATATTCTACATATCCCCGAGTCCCGAGGAAGCGAGGGCA
ACTTCCACAGAGGGATAGGGGTAATTGGGCTGAAGACCCAGCCCGTGACGTTGTCCGATTTGAGCAAAATTAAAAACCAT
TATAATTACAGCATTTCTGATTATACTATTCTTCATTATATTCAGCCATAA

Upstream 100 bases:

>100_bases
AAAGGGAAATTATGGACTAGAAGCTATTTCGTGGCAACAGCCGGTAACGTATCCAGTGAAGTTATCAAGAAGTACATAGA
GGAACAGTGGAGGAAAGAAG

Downstream 100 bases:

>100_bases
AGAATAATATAATATGTATTAATAAGGGAAAATACAGATAATTGTACAATCTTGCAATAAAATTTGCCATAACAATAAGT
AAACACGTAAACGAACCTCG

Product: transposase ISC1476

Products: NA

Alternate protein names: IS Element ISTsi3 OrfB Probably Transposase; Transposase ISC; Neutral Protease; Transposase And Inactivated Derivatives; C-Terminal Of Inactivated Transposase; ISChy8 Transposase; IS Element ISDka2 OrfB; Transposase Family Protein; IS Element ISTsi2 OrfB Probably Transposase

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MKRSNTVRLVVSKEQHEVLKRLGIATAKCWNEVNWLRMKQYKEGKRVDFGITEKAVYEKYKSVLRVNAQQVARKNAEDWR
SFFSLTREKKEGKLPSWFKPRPPGYWKDGRLIVIIRNDRYTVDERNRVVYLKDFNLSLKFKGRLKWHGKQGRLEIIYDEA
RKIWYAHIPVEVETEKVKEGIKASIDLGIVNLATVYVEDGSWYLFKGGSALSHYENYSKRITIVQKTLHRHRQRRSRRLK
LLHEKRSRFLKHALNSMVRRIMEILREKNVGEVVVGYPKEIAKHHGNKLTVNFWNYSYIIKRLEDIGEELGIKVITVDEA
YTSKTCSLCGEAHEDGRVKRGLFVCPRTRKAINADLNGAINILHIPESRGSEGNFHRGIGVIGLKTQPVTLSDLSKIKNH
YNYSISDYTILHYIQP

Sequences:

>Translated_416_residues
MKRSNTVRLVVSKEQHEVLKRLGIATAKCWNEVNWLRMKQYKEGKRVDFGITEKAVYEKYKSVLRVNAQQVARKNAEDWR
SFFSLTREKKEGKLPSWFKPRPPGYWKDGRLIVIIRNDRYTVDERNRVVYLKDFNLSLKFKGRLKWHGKQGRLEIIYDEA
RKIWYAHIPVEVETEKVKEGIKASIDLGIVNLATVYVEDGSWYLFKGGSALSHYENYSKRITIVQKTLHRHRQRRSRRLK
LLHEKRSRFLKHALNSMVRRIMEILREKNVGEVVVGYPKEIAKHHGNKLTVNFWNYSYIIKRLEDIGEELGIKVITVDEA
YTSKTCSLCGEAHEDGRVKRGLFVCPRTRKAINADLNGAINILHIPESRGSEGNFHRGIGVIGLKTQPVTLSDLSKIKNH
YNYSISDYTILHYIQP
>Mature_416_residues
MKRSNTVRLVVSKEQHEVLKRLGIATAKCWNEVNWLRMKQYKEGKRVDFGITEKAVYEKYKSVLRVNAQQVARKNAEDWR
SFFSLTREKKEGKLPSWFKPRPPGYWKDGRLIVIIRNDRYTVDERNRVVYLKDFNLSLKFKGRLKWHGKQGRLEIIYDEA
RKIWYAHIPVEVETEKVKEGIKASIDLGIVNLATVYVEDGSWYLFKGGSALSHYENYSKRITIVQKTLHRHRQRRSRRLK
LLHEKRSRFLKHALNSMVRRIMEILREKNVGEVVVGYPKEIAKHHGNKLTVNFWNYSYIIKRLEDIGEELGIKVITVDEA
YTSKTCSLCGEAHEDGRVKRGLFVCPRTRKAINADLNGAINILHIPESRGSEGNFHRGIGVIGLKTQPVTLSDLSKIKNH
YNYSISDYTILHYIQP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48650; Mature: 48650

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSNTVRLVVSKEQHEVLKRLGIATAKCWNEVNWLRMKQYKEGKRVDFGITEKAVYEKY
CCCCCEEEEEEECHHHHHHHHHCCHHHHHHCCCHHHHHHHHCCCCCEECCCCHHHHHHHH
KSVLRVNAQQVARKNAEDWRSFFSLTREKKEGKLPSWFKPRPPGYWKDGRLIVIIRNDRY
HHHHHCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCEE
TVDERNRVVYLKDFNLSLKFKGRLKWHGKQGRLEIIYDEARKIWYAHIPVEVETEKVKEG
EECCCCCEEEEEECCEEEEEEEEEEEECCCCCEEEEEECCCEEEEEECCEEEEHHHHHCC
IKASIDLGIVNLATVYVEDGSWYLFKGGSALSHYENYSKRITIVQKTLHRHRQRRSRRLK
CCEEEEEEEEEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLHEKRSRFLKHALNSMVRRIMEILREKNVGEVVVGYPKEIAKHHGNKLTVNFWNYSYII
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHCCCEEEEEEECHHHHH
KRLEDIGEELGIKVITVDEAYTSKTCSLCGEAHEDGRVKRGLFVCPRTRKAINADLNGAI
HHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCE
NILHIPESRGSEGNFHRGIGVIGLKTQPVTLSDLSKIKNHYNYSISDYTILHYIQP
EEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECC
>Mature Secondary Structure
MKRSNTVRLVVSKEQHEVLKRLGIATAKCWNEVNWLRMKQYKEGKRVDFGITEKAVYEKY
CCCCCEEEEEEECHHHHHHHHHCCHHHHHHCCCHHHHHHHHCCCCCEECCCCHHHHHHHH
KSVLRVNAQQVARKNAEDWRSFFSLTREKKEGKLPSWFKPRPPGYWKDGRLIVIIRNDRY
HHHHHCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCEE
TVDERNRVVYLKDFNLSLKFKGRLKWHGKQGRLEIIYDEARKIWYAHIPVEVETEKVKEG
EECCCCCEEEEEECCEEEEEEEEEEEECCCCCEEEEEECCCEEEEEECCEEEEHHHHHCC
IKASIDLGIVNLATVYVEDGSWYLFKGGSALSHYENYSKRITIVQKTLHRHRQRRSRRLK
CCEEEEEEEEEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLHEKRSRFLKHALNSMVRRIMEILREKNVGEVVVGYPKEIAKHHGNKLTVNFWNYSYII
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHCCCEEEEEEECHHHHH
KRLEDIGEELGIKVITVDEAYTSKTCSLCGEAHEDGRVKRGLFVCPRTRKAINADLNGAI
HHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCE
NILHIPESRGSEGNFHRGIGVIGLKTQPVTLSDLSKIKNHYNYSISDYTILHYIQP
EEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA