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The map label for this gene is dppB-2 [C]

Identifier: 15898126

GI number: 15898126

Start: 1109513

End: 1110514

Strand: Reverse

Name: dppB-2 [C]

Synonym: SSO1284

Alternate gene names: 15898126

Gene position: 1110514-1109513 (Counterclockwise)

Preceding gene: 15898132

Following gene: 15898125

Centisome position: 37.11

GC content: 35.73

Gene sequence:

>1002_bases
GTGATAAAGTCTTATATGGGGTTCCTTAATTACGCTATAAAAAGGGCTGTAGACAGGATAATTTTACTATTAGGGTTGGT
AATACTCCTCTGGTTTGTTGTGGAAGCTTTGCCTGAACTATTTGGAGTAAATCCAGCAATTTGGTACGCGCCCGTAGGTC
AATTGGGCAAAAGCGCGTCTTATTTTCAGAATATAATTAACGATATCACTACACTTTACGGCTTTAATCAGCCGTTATAC
GTGCAGTTTATAAGATATCTTTATGCTTTATTTTCTTTCAATCTAGGGTATGATTTCCAGCATCATGAATACGTAATAAA
TGAGGTTCTTCAATATCTTCCATATACTATAATACTTACCCTACCTCCATTTATATTTCAGACATTACTAGCTATAGTTG
TTGGTGCGTATGCAGCATTAAAAAGGAATAAGGCTGTAGATCATATAATATCCAATTACATGATTCTTCAGTATAATATT
CCCGGGTTCTTCATATTAGCAGTACTATGGGTTGTATTTGCAGTTTATATTAAGGCGATACCAATTTCTGGCATCCAAGT
TCTTCATTTGAATGATATAGTATCCATATTAAAGGTATATTGGCTTCCTTGGATAATCCAAGTCTTTATTTTCGGGTTCC
CGGTTAGGGGAATACTAATGAGAAATACGATGGTTGATGTATTAGATTCTGACTTCGTTAAATACGCAAGGCTCTCGGGA
TTGAAGGAGAGTACAGTAAGGGCAATAGCTAGGAGAAATTCAATTATACCAGTCATAACGAGAACTGGAATTGACTTAGC
TTTTATACTCGGTGGTATATATTTTATCGAGTATATTTTTGGAATTCCAGGGATGGGTTACTTAGGAATTATTGCTGCCA
CTGAACTAAATATACCCTTATTAACTGGATCGTTCTTTTTCCTAACACTCTACGCCCTAGTCGTACTTTACGCGATGGAT
CTAATATATCCATTAGTTGATCCTAGAATAAAACTAAGGTGA

Upstream 100 bases:

>100_bases
AATATTTAAAATATTTAGAGTCAAGAGTCCTTAAATAAATATTTTATAATTAGTTGATGTCCTTAAATTTGCAAGATAAA
AAGCTTTAAAAACGTCTCCA

Downstream 100 bases:

>100_bases
ATTTAATGAGAATTCCCCCAATATTAAGACTGAAGCTACTTTGGGTTGCGCTAATTATATTCATTTTTCTTTTAGGGAGT
ATTGCATATGGTTTCTTTAC

Product: oligo/dipeptide transport, permease protein (dppB-2)

Products: Ni2; [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MIKSYMGFLNYAIKRAVDRIILLLGLVILLWFVVEALPELFGVNPAIWYAPVGQLGKSASYFQNIINDITTLYGFNQPLY
VQFIRYLYALFSFNLGYDFQHHEYVINEVLQYLPYTIILTLPPFIFQTLLAIVVGAYAALKRNKAVDHIISNYMILQYNI
PGFFILAVLWVVFAVYIKAIPISGIQVLHLNDIVSILKVYWLPWIIQVFIFGFPVRGILMRNTMVDVLDSDFVKYARLSG
LKESTVRAIARRNSIIPVITRTGIDLAFILGGIYFIEYIFGIPGMGYLGIIAATELNIPLLTGSFFFLTLYALVVLYAMD
LIYPLVDPRIKLR

Sequences:

>Translated_333_residues
MIKSYMGFLNYAIKRAVDRIILLLGLVILLWFVVEALPELFGVNPAIWYAPVGQLGKSASYFQNIINDITTLYGFNQPLY
VQFIRYLYALFSFNLGYDFQHHEYVINEVLQYLPYTIILTLPPFIFQTLLAIVVGAYAALKRNKAVDHIISNYMILQYNI
PGFFILAVLWVVFAVYIKAIPISGIQVLHLNDIVSILKVYWLPWIIQVFIFGFPVRGILMRNTMVDVLDSDFVKYARLSG
LKESTVRAIARRNSIIPVITRTGIDLAFILGGIYFIEYIFGIPGMGYLGIIAATELNIPLLTGSFFFLTLYALVVLYAMD
LIYPLVDPRIKLR
>Mature_333_residues
MIKSYMGFLNYAIKRAVDRIILLLGLVILLWFVVEALPELFGVNPAIWYAPVGQLGKSASYFQNIINDITTLYGFNQPLY
VQFIRYLYALFSFNLGYDFQHHEYVINEVLQYLPYTIILTLPPFIFQTLLAIVVGAYAALKRNKAVDHIISNYMILQYNI
PGFFILAVLWVVFAVYIKAIPISGIQVLHLNDIVSILKVYWLPWIIQVFIFGFPVRGILMRNTMVDVLDSDFVKYARLSG
LKESTVRAIARRNSIIPVITRTGIDLAFILGGIYFIEYIFGIPGMGYLGIIAATELNIPLLTGSFFFLTLYALVVLYAMD
LIYPLVDPRIKLR

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789888, Length=314, Percent_Identity=25.796178343949, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1787053, Length=329, Percent_Identity=25.8358662613982, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1789965, Length=301, Percent_Identity=25.5813953488372, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787497, Length=314, Percent_Identity=24.8407643312102, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788504, Length=281, Percent_Identity=27.0462633451957, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787761, Length=295, Percent_Identity=27.7966101694915, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=22.0588235294118, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38043; Mature: 38043

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSYMGFLNYAIKRAVDRIILLLGLVILLWFVVEALPELFGVNPAIWYAPVGQLGKSAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHCCCHH
YFQNIINDITTLYGFNQPLYVQFIRYLYALFSFNLGYDFQHHEYVINEVLQYLPYTIILT
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH
LPPFIFQTLLAIVVGAYAALKRNKAVDHIISNYMILQYNIPGFFILAVLWVVFAVYIKAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHC
PISGIQVLHLNDIVSILKVYWLPWIIQVFIFGFPVRGILMRNTMVDVLDSDFVKYARLSG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LKESTVRAIARRNSIIPVITRTGIDLAFILGGIYFIEYIFGIPGMGYLGIIAATELNIPL
CHHHHHHHHHHCCCCEEEHECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCH
LTGSFFFLTLYALVVLYAMDLIYPLVDPRIKLR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIKSYMGFLNYAIKRAVDRIILLLGLVILLWFVVEALPELFGVNPAIWYAPVGQLGKSAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHCCCHH
YFQNIINDITTLYGFNQPLYVQFIRYLYALFSFNLGYDFQHHEYVINEVLQYLPYTIILT
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH
LPPFIFQTLLAIVVGAYAALKRNKAVDHIISNYMILQYNIPGFFILAVLWVVFAVYIKAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHC
PISGIQVLHLNDIVSILKVYWLPWIIQVFIFGFPVRGILMRNTMVDVLDSDFVKYARLSG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LKESTVRAIARRNSIIPVITRTGIDLAFILGGIYFIEYIFGIPGMGYLGIIAATELNIPL
CHHHHHHHHHHCCCCEEEHECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCH
LTGSFFFLTLYALVVLYAMDLIYPLVDPRIKLR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ni2; [Periplasm]; ATP; H2O [C]

Specific reaction: Ni2+ [Periplasm] + ATP + H2O = Ni2+ [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]