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The map label for this gene is dppF-2 [H]

Identifier: 15898121

GI number: 15898121

Start: 1104508

End: 1104819

Strand: Reverse

Name: dppF-2 [H]

Synonym: SSO1279

Alternate gene names: 15898121

Gene position: 1104819-1104508 (Counterclockwise)

Preceding gene: 15898123

Following gene: 15898120

Centisome position: 36.92

GC content: 39.1

Gene sequence:

>312_bases
TTGGTGAAACACCACTGTAGAATAGGAGTAATGTATTTAGGTAAGGTAGTGGAAATCGGAACTCCGGAAGAAGTAATAAG
CGAGCCTTTACATCCTTACACTCAAGCACTACTGCAAGCAGTGCCTGTTCCAGATCCAGATATTGGTATAAAGGAACCCA
ATATCAAAGGTGAGATTCAAAGCCCACTAGAGTTACCAAAGGGATGTGTATTCTATAGTAGATGTCCATTTGCAAAAGAT
ATTTGTAAGGAAAAACCCCCAGAGATAAAGAGGATTAAAGGAGATCATTATGTTGCATGCCACCTATATTAA

Upstream 100 bases:

>100_bases
ATATGAAAATTTTTTGCTTCTTGTGTTGAAATAAGCCGATTTTTCTAACTCCGCTCTGATATTTTTCTCTTCCATAGAAA
TTGTATCATTTTGAGTAAAA

Downstream 100 bases:

>100_bases
CTTGTTTTTATCATTATTTTTCTTTTTTCCTTTATTTCTATCTCTGACTTTTTATGGCACACAATTAATAGGATATCATG
GAGTATTAAGCTCTCTTGCA

Product: oligo/dipeptide transport, ATP binding protein. carboxy-end fragment. (dppF-2)

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MVKHHCRIGVMYLGKVVEIGTPEEVISEPLHPYTQALLQAVPVPDPDIGIKEPNIKGEIQSPLELPKGCVFYSRCPFAKD
ICKEKPPEIKRIKGDHYVACHLY

Sequences:

>Translated_103_residues
MVKHHCRIGVMYLGKVVEIGTPEEVISEPLHPYTQALLQAVPVPDPDIGIKEPNIKGEIQSPLELPKGCVFYSRCPFAKD
ICKEKPPEIKRIKGDHYVACHLY
>Mature_103_residues
MVKHHCRIGVMYLGKVVEIGTPEEVISEPLHPYTQALLQAVPVPDPDIGIKEPNIKGEIQSPLELPKGCVFYSRCPFAKD
ICKEKPPEIKRIKGDHYVACHLY

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG4608

COG function: function code E; ABC-type oligopeptide transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787500, Length=106, Percent_Identity=47.1698113207547, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI1789962, Length=91, Percent_Identity=43.956043956044, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1787758, Length=84, Percent_Identity=38.0952380952381, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI48994883, Length=81, Percent_Identity=43.2098765432099, Blast_Score=69, Evalue=4e-14,
Organism=Escherichia coli, GI1789963, Length=97, Percent_Identity=37.1134020618557, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1787548, Length=104, Percent_Identity=36.5384615384615, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 11592; Mature: 11592

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKHHCRIGVMYLGKVVEIGTPEEVISEPLHPYTQALLQAVPVPDPDIGIKEPNIKGEIQ
CCCCCCEEHHHHHCEECCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
SPLELPKGCVFYSRCPFAKDICKEKPPEIKRIKGDHYVACHLY
CCCCCCCCEEEECCCCCHHHHHHCCCCCCEEECCCCEEEEEEC
>Mature Secondary Structure
MVKHHCRIGVMYLGKVVEIGTPEEVISEPLHPYTQALLQAVPVPDPDIGIKEPNIKGEIQ
CCCCCCEEHHHHHCEECCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
SPLELPKGCVFYSRCPFAKDICKEKPPEIKRIKGDHYVACHLY
CCCCCCCCEEEECCCCCHHHHHHCCCCCCEEECCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]