Click here to switch to the map view.

The map label for this gene is rpl21E [H]

Identifier: 15897652

GI number: 15897652

Start: 636769

End: 637074

Strand: Reverse

Name: rpl21E [H]

Synonym: SSO0752

Alternate gene names: 15897652

Gene position: 637074-636769 (Counterclockwise)

Preceding gene: 15897653

Following gene: 15897651

Centisome position: 21.29

GC content: 38.56

Gene sequence:

>306_bases
ATGGTTAAACATTCGAAGGGTTATCGGACTAGGTCAAGGAGTCTACTAAGAAAGAGTCCTAGAGAAAGGGGTGCAGTTCC
ATCTCTAAGCAAGCTAATGGTTGAATATAAGGAAGGTGATAATGTAGTGGTAAAGATAAATCCATCAGTACATCAAGGTA
TGCCTCATAGGCGTTATCAAGGTAAAGTAGGGAAGATTATTGGAAAAAGAGGTAGAGCATATTTAGTTTCGGTTACATTG
GGTGATAAGGAAAAGGTGATAATTGTTAGGCCGGAACATTTAGTTCCTTTTAATTCAAGTGGGTGA

Upstream 100 bases:

>100_bases
GGCACCCCCGCAATCTATTATACTGAGTTCAGTTTTACCTTATATGTTTTTCCAACAAAAATCTTAATTATGTGGTATAT
AATGAGTATGAGGGAATATT

Downstream 100 bases:

>100_bases
TTAGTATTTGTCATCTGTATATATAGTTGAGGAGCATTATATTCCTTATTCAGTAGCGAAAAAATTACTAACTGATGTAA
TTAGATCTGGAGGTTCGTCT

Product: 50S ribosomal protein L21e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 101

Protein sequence:

>101_residues
MVKHSKGYRTRSRSLLRKSPRERGAVPSLSKLMVEYKEGDNVVVKINPSVHQGMPHRRYQGKVGKIIGKRGRAYLVSVTL
GDKEKVIIVRPEHLVPFNSSG

Sequences:

>Translated_101_residues
MVKHSKGYRTRSRSLLRKSPRERGAVPSLSKLMVEYKEGDNVVVKINPSVHQGMPHRRYQGKVGKIIGKRGRAYLVSVTL
GDKEKVIIVRPEHLVPFNSSG
>Mature_101_residues
MVKHSKGYRTRSRSLLRKSPRERGAVPSLSKLMVEYKEGDNVVVKINPSVHQGMPHRRYQGKVGKIIGKRGRAYLVSVTL
GDKEKVIIVRPEHLVPFNSSG

Specific function: Unknown

COG id: COG2139

COG function: function code J; Ribosomal protein L21E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001147
- InterPro:   IPR022856
- InterPro:   IPR018259
- InterPro:   IPR008991 [H]

Pfam domain/function: PF01157 Ribosomal_L21e [H]

EC number: NA

Molecular weight: Translated: 11378; Mature: 11378

Theoretical pI: Translated: 11.50; Mature: 11.50

Prosite motif: PS01171 RIBOSOMAL_L21E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKHSKGYRTRSRSLLRKSPRERGAVPSLSKLMVEYKEGDNVVVKINPSVHQGMPHRRYQ
CCCCCCCCCHHHHHHHHCCCHHCCCCCCHHHHHEEECCCCEEEEEECCHHHCCCCCCCCC
GKVGKIIGKRGRAYLVSVTLGDKEKVIIVRPEHLVPFNSSG
CCHHHHCCCCCCEEEEEEEECCCCCEEEECCCEECCCCCCC
>Mature Secondary Structure
MVKHSKGYRTRSRSLLRKSPRERGAVPSLSKLMVEYKEGDNVVVKINPSVHQGMPHRRYQ
CCCCCCCCCHHHHHHHHCCCHHCCCCCCHHHHHEEECCCCEEEEEECCHHHCCCCCCCCC
GKVGKIIGKRGRAYLVSVTLGDKEKVIIVRPEHLVPFNSSG
CCHHHHCCCCCCEEEEEEEECCCCCEEEECCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA